Mercurial > repos > devteam > picard
comparison picard_AddOrReplaceReadGroups.xml @ 14:465cbb0cf2eb draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author | devteam |
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date | Wed, 07 Dec 2016 14:56:30 -0500 |
parents | 7e6fd3d0f16e |
children | 00fe2ff64467 |
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13:7e6fd3d0f16e | 14:465cbb0cf2eb |
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11 @set_read_group_vars@ | 11 @set_read_group_vars@ |
12 @java_options@ | 12 @java_options@ |
13 @symlink_element_identifier@ | 13 @symlink_element_identifier@ |
14 picard | 14 picard |
15 AddOrReplaceReadGroups | 15 AddOrReplaceReadGroups |
16 INPUT='$inputFile.element_identifier' | 16 INPUT='$escaped_element_identifier' |
17 $format_read_group("RGLB=", $rg_lb, '"') | 17 $format_read_group("RGLB=", $rg_lb, '"') |
18 $format_read_group("RGPL=", $rg_pl, '"') | 18 $format_read_group("RGPL=", $rg_pl, '"') |
19 $format_read_group("RGPU=", $rg_pu, '"') | 19 $format_read_group("RGPU=", $rg_pu, '"') |
20 $format_read_group("RGSM=", $rg_sm, '"') | 20 $format_read_group("RGSM=", $rg_sm, '"') |
21 $format_read_group("RGID=", $rg_id, '"') | 21 $format_read_group("RGID=", $rg_id, '"') |