Mercurial > repos > devteam > picard

comparison picard_CollectAlignmentSummaryMetrics.xml @ 14:465cbb0cf2eb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:30 -0500
parents 7e6fd3d0f16e
children 5053a18d9bc8
comparison
equal deleted inserted replaced
13:7e6fd3d0f16e 14:465cbb0cf2eb
17 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) 17 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path )
18 #end if 18 #end if
19 19
20 picard 20 picard
21 CollectAlignmentSummaryMetrics 21 CollectAlignmentSummaryMetrics
22 INPUT='$inputFile.element_identifier' 22 INPUT='$escaped_element_identifier'
23 OUTPUT="${outFile}" 23 OUTPUT="${outFile}"
24 MAX_INSERT_SIZE=${maxinsert} 24 MAX_INSERT_SIZE=${maxinsert}
25 #for $sequence in $adapters: 25 #for $sequence in $adapters:
26 ADAPTER_SEQUENCE="${sequence.adapter}" 26 ADAPTER_SEQUENCE="${sequence.adapter}"
27 #end for 27 #end for