Mercurial > repos > devteam > picard

comparison picard_MeanQualityByCycle.xml @ 14:465cbb0cf2eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:30 -0500
parents 7e6fd3d0f16e
children 5053a18d9bc8
comparison
equal deleted inserted replaced
13:7e6fd3d0f16e 14:465cbb0cf2eb
18 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) 18 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path )
19 #end if 19 #end if
20 20
21 picard 21 picard
22 MeanQualityByCycle 22 MeanQualityByCycle
23 INPUT='$inputFile.element_identifier' 23 INPUT='$escaped_element_identifier'
24 OUTPUT="${outFile}" 24 OUTPUT="${outFile}"
25 CHART_OUTPUT="${pdfFile}" 25 CHART_OUTPUT="${pdfFile}"
26 REFERENCE_SEQUENCE="${reference_fasta_filename}" 26 REFERENCE_SEQUENCE="${reference_fasta_filename}"
27 ALIGNED_READS_ONLY="${aligned_reads_only}" 27 ALIGNED_READS_ONLY="${aligned_reads_only}"
28 PF_READS_ONLY="${pf_reads_only}" 28 PF_READS_ONLY="${pf_reads_only}"