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comparison picard_macros.xml @ 14:465cbb0cf2eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 74ee0f0b594075fab7f707aaffb4a7f9dac35f2f
author devteam
date Wed, 07 Dec 2016 14:56:30 -0500
parents 7e6fd3d0f16e
children 6741a8ace658
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13:7e6fd3d0f16e 14:465cbb0cf2eb
15 <yield/> 15 <yield/>
16 </requirements> 16 </requirements>
17 </xml> 17 </xml>
18 18
19 <token name="@symlink_element_identifier@"><![CDATA[ 19 <token name="@symlink_element_identifier@"><![CDATA[
20 ln -f -s '$inputFile' '$inputFile.element_identifier' && 20 #import re
21 #set escaped_element_identifier = re.sub('[^\w\-]', '_', str($inputFile.element_identifier))
22 ln -f -s '$inputFile' '$escaped_element_identifier' &&
21 ]]></token> 23 ]]></token>
22 24
23 <token name="@java_options@"><![CDATA[ 25 <token name="@java_options@"><![CDATA[
24 _JAVA_OPTIONS=\${_JAVA_OPTIONS:-'-Xmx2048m -Xms256m'} && 26 _JAVA_OPTIONS=\${_JAVA_OPTIONS:-'-Xmx2048m -Xms256m'} &&
25 export _JAVA_OPTIONS && 27 export _JAVA_OPTIONS &&