Mercurial > repos > devteam > picard
comparison picard_SamToFastq.xml @ 19:5053a18d9bc8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
author | iuc |
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date | Mon, 16 Apr 2018 21:27:29 -0400 |
parents | 465cbb0cf2eb |
children | 2a17c789e0a5 |
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18:7615ac66c6e5 | 19:5053a18d9bc8 |
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1 <tool name="SamToFastq" id="picard_SamToFastq" version="@TOOL_VERSION@.0"> | 1 <tool name="SamToFastq" id="picard_SamToFastq" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> |
2 <description>extract reads and qualities from SAM/BAM dataset and convert to fastq</description> | 2 <description>extract reads and qualities from SAM/BAM dataset and convert to fastq</description> |
3 <macros> | 3 <macros> |
4 <import>picard_macros.xml</import> | 4 <import>picard_macros.xml</import> |
5 <token name="@WRAPPER_VERSION@">0</token> | |
5 </macros> | 6 </macros> |
6 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
7 <command detect_errors="exit_code"><![CDATA[ | 8 <command detect_errors="exit_code"><![CDATA[ |
8 | 9 |
9 echo "BAM" > $report && ## This is necessary for output dataset detection (see output tags below) | 10 echo "BAM" > $report && ## This is necessary for output dataset detection (see output tags below) |
187 Possible values: {true, false} | 188 Possible values: {true, false} |
188 | 189 |
189 @more_info@ | 190 @more_info@ |
190 | 191 |
191 </help> | 192 </help> |
193 <expand macro="citations" /> | |
192 </tool> | 194 </tool> |
193 | |
194 |