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comparison picard_SortSam.xml @ 19:5053a18d9bc8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
author iuc
date Mon, 16 Apr 2018 21:27:29 -0400
parents 465cbb0cf2eb
children 2a17c789e0a5
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18:7615ac66c6e5 19:5053a18d9bc8
1 <tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.1"> 1 <tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>sort SAM/BAM dataset</description> 2 <description>sort SAM/BAM dataset</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">0</token>
5 </macros> 6 </macros>
6 <expand macro="requirements" /> 7 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 #if $sort_order == "queryname": 9 #if $sort_order == "queryname":
9 #set $output = "output.sam" 10 #set $output = "output.sam"
79 SO=SortOrder Sort order of output file. You can either sort by queryname or by coordinate. 80 SO=SortOrder Sort order of output file. You can either sort by queryname or by coordinate.
80 81
81 @more_info@ 82 @more_info@
82 83
83 </help> 84 </help>
85 <expand macro="citations" />
84 </tool> 86 </tool>