Mercurial > repos > devteam > picard
comparison picard_macros.xml @ 19:5053a18d9bc8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
author | iuc |
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date | Mon, 16 Apr 2018 21:27:29 -0400 |
parents | 6741a8ace658 |
children | 2a17c789e0a5 |
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18:7615ac66c6e5 | 19:5053a18d9bc8 |
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5 <option value="SILENT">Silent</option> | 5 <option value="SILENT">Silent</option> |
6 <option value="STRICT">Strict</option> | 6 <option value="STRICT">Strict</option> |
7 </param> | 7 </param> |
8 </xml> | 8 </xml> |
9 | 9 |
10 <token name="@TOOL_VERSION@">2.7.1</token> | 10 <token name="@TOOL_VERSION@">2.18.2</token> |
11 | 11 |
12 <xml name="requirements"> | 12 <xml name="requirements"> |
13 <requirements> | 13 <requirements> |
14 <requirement type="package" version="2.7.1">picard</requirement> | 14 <requirement type="package" version="@TOOL_VERSION@">picard</requirement> |
15 <yield/> | 15 <yield/> |
16 </requirements> | 16 </requirements> |
17 </xml> | 17 </xml> |
18 | 18 |
19 <token name="@symlink_element_identifier@"><![CDATA[ | 19 <token name="@symlink_element_identifier@"><![CDATA[ |
23 ]]></token> | 23 ]]></token> |
24 | 24 |
25 <token name="@java_options@"><![CDATA[ | 25 <token name="@java_options@"><![CDATA[ |
26 _JAVA_OPTIONS=\${_JAVA_OPTIONS:-'-Xmx2048m -Xms256m'} && | 26 _JAVA_OPTIONS=\${_JAVA_OPTIONS:-'-Xmx2048m -Xms256m'} && |
27 export _JAVA_OPTIONS && | 27 export _JAVA_OPTIONS && |
28 ]]></token> | |
29 | |
30 <token name="@handle_reference_source@"><![CDATA[ | |
31 #if str( $reference_source.reference_source_selector ) == "history": | |
32 ln -s '${reference_source.ref_file}' '${reference_fasta_filename}' && | |
33 #else: | |
34 #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) | |
35 #end if | |
28 ]]></token> | 36 ]]></token> |
29 | 37 |
30 <token name="@more_info@"> | 38 <token name="@more_info@"> |
31 ------ | 39 ------ |
32 | 40 |
94 This will be added shortly | 102 This will be added shortly |
95 | 103 |
96 | 104 |
97 </token> | 105 </token> |
98 | 106 |
107 <xml name="citations"> | |
108 <citations> | |
109 <citation type="bibtex">@misc{Picard, | |
110 author = {Broad Institute}, | |
111 title = {Picard}, | |
112 publisher = {GitHub}, | |
113 journal = { Broad Institute, GitHub repository}, | |
114 url = {http://broadinstitute.github.io/picard/} | |
115 } | |
116 </citation> | |
117 </citations> | |
118 </xml> | |
119 | |
99 | 120 |
100 </macros> | 121 </macros> |