Mercurial > repos > devteam > picard

comparison picard_CollectRnaSeqMetrics.xml @ 9:5eaa8a968300 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit 1869970193a1878acbc0f8a79b81dd02b37f1dc1
author devteam
date Fri, 09 Oct 2015 17:43:13 -0400
parents 3a3234d7a2e8
children 05087b27692a
comparison
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8:3a3234d7a2e8 9:5eaa8a968300
81 <option value="FIRST_READ_TRANSCRIPTION_STRAND">First read transcription strand</option> 81 <option value="FIRST_READ_TRANSCRIPTION_STRAND">First read transcription strand</option>
82 <option value="SECOND_READ_TRANSCRIPTION_STRAND">Second read transcription strand</option> 82 <option value="SECOND_READ_TRANSCRIPTION_STRAND">Second read transcription strand</option>
83 </param> 83 </param>
84 <param name="minimum_length" type="integer" value="500" label="When calculating coverage based values use only use transcripts of this length or greater" help="MINIMUM_LENGTH; default=500"/> 84 <param name="minimum_length" type="integer" value="500" label="When calculating coverage based values use only use transcripts of this length or greater" help="MINIMUM_LENGTH; default=500"/>
85 <repeat name="ignore_list" title="Sequences to ignore" min="0" help="You can provide multiple sequences by clicking the button below"> 85 <repeat name="ignore_list" title="Sequences to ignore" min="0" help="You can provide multiple sequences by clicking the button below">
86 <param name="sequence" type="text" size="80" label="Ignore reads matching this sequence"/> 86 <param name="sequence" type="text" label="Ignore reads matching this sequence"/>
87 </repeat> 87 </repeat>
88 <param name="rrna_fragment_percentage" type="float" value="0.8" label="This percentage of the length of a fragment must overlap one of the ribosomal intervals for a read or read pair to be considered rRNA." help="RRNA_FRAGMENT_PERCENTAGE; default=0.8"/> 88 <param name="rrna_fragment_percentage" type="float" value="0.8" label="This percentage of the length of a fragment must overlap one of the ribosomal intervals for a read or read pair to be considered rRNA." help="RRNA_FRAGMENT_PERCENTAGE; default=0.8"/>
89 <param name="metric_accumulation_level" type="select" label="The level(s) at which to accumulate metrics" multiple="true" help="METRIC_ACCUMULATION_LEVEL"> 89 <param name="metric_accumulation_level" type="select" label="The level(s) at which to accumulate metrics" multiple="true" help="METRIC_ACCUMULATION_LEVEL">
90 <option value="ALL_READS" selected="True">All reads</option> 90 <option value="ALL_READS" selected="True">All reads</option>
91 <option value="SAMPLE">Sample</option> 91 <option value="SAMPLE">Sample</option>