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comparison picard_MarkDuplicates.xml @ 28:881d7645d1bf draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 92e89c89178482870c14cf15f38fbfd4470aa130"
author iuc
date Sat, 15 Jan 2022 12:39:30 +0000
parents 7d34178f2812
children 585027e65f3b
comparison
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27:a1f0b3f4b781 28:881d7645d1bf
1 <tool name="MarkDuplicates" id="picard_MarkDuplicates" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="MarkDuplicates" id="picard_MarkDuplicates" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>examine aligned records in BAM datasets to locate duplicate molecules</description> 2 <description>examine aligned records in BAM datasets to locate duplicate molecules</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">2</token> 5 <token name="@WRAPPER_VERSION@">3</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 @java_options@ 9 @java_options@
10 @symlink_element_identifier@ 10 @symlink_element_identifier@
32 #if $barcode_tag: 32 #if $barcode_tag:
33 BARCODE_TAG='${barcode_tag}' 33 BARCODE_TAG='${barcode_tag}'
34 #end if 34 #end if
35 35
36 VALIDATION_STRINGENCY='${validation_stringency}' 36 VALIDATION_STRINGENCY='${validation_stringency}'
37 TAGGING_POLICY=All
37 QUIET=true 38 QUIET=true
38 VERBOSITY=ERROR 39 VERBOSITY=ERROR
39 @TMPDIR_OPTION@ 40 @TMPDIR_OPTION@
40 41
41 ]]></command> 42 ]]></command>