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comparison picard_ReorderSam.xml @ 28:881d7645d1bf draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 92e89c89178482870c14cf15f38fbfd4470aa130"
author iuc
date Sat, 15 Jan 2022 12:39:30 +0000
parents 2a17c789e0a5
children f9242e01365a
comparison
equal deleted inserted replaced
27:a1f0b3f4b781 28:881d7645d1bf
1 <tool name="ReorderSam" id="picard_ReorderSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> 1 <tool name="ReorderSam" id="picard_ReorderSam" version="@TOOL_VERSION@.@WRAPPER_VERSION@">
2 <description>reorder reads to match ordering in reference sequences</description> 2 <description>reorder reads to match ordering in reference sequences</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 <token name="@WRAPPER_VERSION@">1</token> 5 <token name="@WRAPPER_VERSION@">1</token>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <xrefs>
8 <command detect_errors="exit_code"><![CDATA[ 8 <xref type="bio.tools">picard_reordersam</xref>
9 </xrefs>
10 <expand macro="requirements" />
11 <command detect_errors="exit_code"><![CDATA[
9 @java_options@ 12 @java_options@
10 @symlink_element_identifier@ 13 @symlink_element_identifier@
11 #set $picard_dict = "localref.dict" 14 #set $picard_dict = "localref.dict"
12 #set $ref_fasta = "localref.fa" ## This is done because picards "likes" .fa extension 15 #set $ref_fasta = "localref.fa" ## This is done because picards "likes" .fa extension
13 16