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comparison picard_SortSam.xml @ 11:efc56ee1ade4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author devteam
date Wed, 11 Nov 2015 12:23:17 -0500
parents 3a3234d7a2e8
children 05087b27692a
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10:777ccdd1d6e4 11:efc56ee1ade4
1 <tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.0"> 1 <tool id="picard_SortSam" name="SortSam" version="@TOOL_VERSION@.1">
2 <description>sort SAM/BAM dataset</description> 2 <description>sort SAM/BAM dataset</description>
3 <macros> 3 <macros>
4 <import>picard_macros.xml</import> 4 <import>picard_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
19 <inputs> 19 <inputs>
20 <param name="inputFile" type="data" format="sam,bam" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/> 20 <param name="inputFile" type="data" format="sam,bam" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/>
21 <param name="sort_order" type="select" display="radio" label="Sort order" help="SORT_ORDER; default=coordinate"> 21 <param name="sort_order" type="select" display="radio" label="Sort order" help="SORT_ORDER; default=coordinate">
22 <option value="coordinate" selected="True">Coordinate</option> 22 <option value="coordinate" selected="True">Coordinate</option>
23 <option value="queryname">Queryname</option> 23 <option value="queryname">Queryname</option>
24 <option value="unsorted">Unsorted</option>
25 </param> 24 </param>
26 <expand macro="VS" /> 25 <expand macro="VS" />
27 </inputs> 26 </inputs>
28 27
29 <outputs> 28 <outputs>
54 @dataset_collections@ 53 @dataset_collections@
55 54
56 @description@ 55 @description@
57 56
58 SORT_ORDER=SortOrder 57 SORT_ORDER=SortOrder
59 SO=SortOrder Sort order of output file Required. Possible values: {unsorted, queryname, coordinate} 58 SO=SortOrder Sort order of output file. You can either sort by queryname or by coordinate.
60 59
61 @more_info@ 60 @more_info@
62 61
63 </help> 62 </help>
64 </tool> 63 </tool>