Mercurial > repos > devteam > picard
comparison picard_BedToIntervalList.xml @ 32:f9242e01365a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
author | iuc |
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date | Mon, 25 Sep 2023 08:32:17 +0000 |
parents | 2a17c789e0a5 |
children | 3f254c5ced1d |
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31:585027e65f3b | 32:f9242e01365a |
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16 #if str( $reference_source.reference_source_selector ) == "history": | 16 #if str( $reference_source.reference_source_selector ) == "history": |
17 | 17 |
18 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" | 18 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" |
19 QUIET=true | 19 QUIET=true |
20 VERBOSITY=ERROR | 20 VERBOSITY=ERROR |
21 @TMPDIR_OPTION@ | |
22 | 21 |
23 && | 22 && |
24 | 23 |
25 #else: | 24 #else: |
26 | 25 |
35 OUTPUT="${outFile}" | 34 OUTPUT="${outFile}" |
36 | 35 |
37 SEQUENCE_DICTIONARY="${picard_dict}" | 36 SEQUENCE_DICTIONARY="${picard_dict}" |
38 QUIET=true | 37 QUIET=true |
39 VERBOSITY=ERROR | 38 VERBOSITY=ERROR |
40 @TMPDIR_OPTION@ | |
41 | 39 |
42 ]]></command> | 40 ]]></command> |
43 | 41 |
44 <inputs> | 42 <inputs> |
45 | 43 |