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comparison picard_CollectHsMetrics.xml @ 32:f9242e01365a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
author iuc
date Mon, 25 Sep 2023 08:32:17 +0000
parents b9fbec5ac6b2
children 3f254c5ced1d
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31:585027e65f3b 32:f9242e01365a
20 BAIT_INTERVALS='${baitFile}' 20 BAIT_INTERVALS='${baitFile}'
21 TARGET_INTERVALS='${targetFile}' 21 TARGET_INTERVALS='${targetFile}'
22 VALIDATION_STRINGENCY=${validation_stringency} 22 VALIDATION_STRINGENCY=${validation_stringency}
23 QUIET=true 23 QUIET=true
24 VERBOSITY=ERROR 24 VERBOSITY=ERROR
25 @TMPDIR_OPTION@
26 ]]></command> 25 ]]></command>
27 <inputs> 26 <inputs>
28 <param name="inputFile" type="data" format="sam,bam" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset" /> 27 <param name="inputFile" type="data" format="sam,bam" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset" />
29 <param name="baitFile" type="data" format="picard_interval_list" label="An interval list file that contains the locations of the baits used" help="If empty, upload or convert from BED" /> 28 <param name="baitFile" type="data" format="picard_interval_list" label="An interval list file that contains the locations of the baits used" help="If empty, upload or convert from BED" />
30 <param name="targetFile" type="data" format="picard_interval_list" label="An interval list file that contains the locations of the targets" help="If empty, upload or convert from BED" /> 29 <param name="targetFile" type="data" format="picard_interval_list" label="An interval list file that contains the locations of the targets" help="If empty, upload or convert from BED" />