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comparison picard_DownsampleSam.xml @ 32:f9242e01365a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
author iuc
date Mon, 25 Sep 2023 08:32:17 +0000
parents 2a17c789e0a5
children 3f254c5ced1d
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31:585027e65f3b 32:f9242e01365a
14 OUTPUT="${outFile}" 14 OUTPUT="${outFile}"
15 PROBABILITY=${probability} 15 PROBABILITY=${probability}
16 RANDOM_SEED=${seed} 16 RANDOM_SEED=${seed}
17 QUIET=true 17 QUIET=true
18 VERBOSITY=ERROR 18 VERBOSITY=ERROR
19 @TMPDIR_OPTION@
20 VALIDATION_STRINGENCY=${validation_stringency} 19 VALIDATION_STRINGENCY=${validation_stringency}
21 ]]></command> 20 ]]></command>
22 <inputs> 21 <inputs>
23 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM or BAM dataset" /> 22 <param format="sam,bam" name="inputFile" type="data" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM or BAM dataset" />
24 <param name="probability" type="float" min="0.0" max="1.0" label="Probability (between 0 and 1) that any given read will be kept" help="PROBABILITY; specify 1 to keep all reads, 0.1 to keep 10% of the reads" value="1" /> 23 <param name="probability" type="float" min="0.0" max="1.0" label="Probability (between 0 and 1) that any given read will be kept" help="PROBABILITY; specify 1 to keep all reads, 0.1 to keep 10% of the reads" value="1" />