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comparison picard_ReorderSam.xml @ 32:f9242e01365a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
author iuc
date Mon, 25 Sep 2023 08:32:17 +0000
parents 881d7645d1bf
children 3f254c5ced1d
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31:585027e65f3b 32:f9242e01365a
19 #if str( $reference_source.reference_source_selector ) == "history": 19 #if str( $reference_source.reference_source_selector ) == "history":
20 20
21 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}" 21 picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}"
22 QUIET=true 22 QUIET=true
23 VERBOSITY=ERROR 23 VERBOSITY=ERROR
24 @TMPDIR_OPTION@
25 24
26 && 25 &&
27 26
28 #else: 27 #else:
29 28
40 ALLOW_CONTIG_LENGTH_DISCORDANCE="${allow_contig_length_discordance}" 39 ALLOW_CONTIG_LENGTH_DISCORDANCE="${allow_contig_length_discordance}"
41 40
42 VALIDATION_STRINGENCY="${validation_stringency}" 41 VALIDATION_STRINGENCY="${validation_stringency}"
43 QUIET=true 42 QUIET=true
44 VERBOSITY=ERROR 43 VERBOSITY=ERROR
45 @TMPDIR_OPTION@
46 44
47 ]]></command> 45 ]]></command>
48 46
49 <inputs> 47 <inputs>
50 48