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comparison picard_RevertOriginalBaseQualitiesAndAddMateCigar.xml @ 32:f9242e01365a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 285fab1660daa944d6833ae1e059b30cb1e88309
author iuc
date Mon, 25 Sep 2023 08:32:17 +0000
parents 2a17c789e0a5
children 3f254c5ced1d
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equal deleted inserted replaced
31:585027e65f3b 32:f9242e01365a
18 18
19 SORT_ORDER=coordinate 19 SORT_ORDER=coordinate
20 VALIDATION_STRINGENCY="${validation_stringency}" 20 VALIDATION_STRINGENCY="${validation_stringency}"
21 QUIET=true 21 QUIET=true
22 VERBOSITY=ERROR 22 VERBOSITY=ERROR
23 @TMPDIR_OPTION@
24 23
25 ]]></command> 24 ]]></command>
26 <inputs> 25 <inputs>
27 <param format="sam,bam" name="inputFile" type="data" multiple="True" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/> 26 <param format="sam,bam" name="inputFile" type="data" multiple="True" label="Select SAM/BAM dataset or dataset collection" help="If empty, upload or import a SAM/BAM dataset"/>
28 <param name="restore_original_qualities" type="boolean" checked="True" label="Restore original qualities from the OQ field to the QUAL field if available" help="RESTORE_ORIGINAL_QUALITIES; default=True"/> 27 <param name="restore_original_qualities" type="boolean" checked="True" label="Restore original qualities from the OQ field to the QUAL field if available" help="RESTORE_ORIGINAL_QUALITIES; default=True"/>