--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picard_RS_output2.sam	Tue Oct 23 13:14:29 2012 -0400
@@ -0,0 +1,22 @@
+@HD	VN:1.0	SO:unsorted
+@SQ	SN:phiX174	LN:5386	UR:file:/afs/bx.psu.edu/user/kpvincent/working/phiX.fa	M5:f479307bca04825e98008f37e4f6251a
+@PG	ID:Bowtie	VN:0.12.7	CL:"bowtie -q -p 4 -S --phred33-quals /genome/phiX/bowtie_index/phiX dataset_437.dat"
+HWI-EAS91_1_30788AAXX:1:1:1761:343/1	0	phiX174	5	255	50M	*	0	0	TTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGA	IIIIIII""IIIIIIIIIII?I0IIIIHIIIGIIIII0II?I""IIIIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1647:512/1	0	phiX174	401	255	50M	*	0	0	TACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCA	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1578:331/1	0	phiX174	209	255	50M	*	0	0	TGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGC	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1746:351/1	0	phiX174	1218	255	50M	*	0	0	CTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGT	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1582:633/1	0	phiX174	1517	255	50M	*	0	0	CCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCAC	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1599:330/1	0	phiX174	803	255	50M	*	0	0	AGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTC	IIIIIII""IIIIIIIIIIIIIIIIIII<III@II"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1598:534/1	0	phiX174	1717	255	50M	*	0	0	GCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAA	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1749:466/1	0	phiX174	2201	255	50M	*	0	0	TTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCT	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1570:620/1	4	*	0	0	*	*	0	0	GAGTAACAAAGTAAAGTTTGGACCGTTTTTGTCTCGTGCTCGTCGCTGCG	IIIIIII""IIIIIIIIIIIIIBIIIIIIIIIIII"IIIIIII000IIII	XM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1629:446/1	0	phiX174	2301	255	50M	*	0	0	AGGTTATAACGCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGT	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1763:587/1	0	phiX174	2501	255	50M	*	0	0	AAGCTACATCGTCAACGTTATATTTTGATAGTTTGACGGTTAATGCTGGT	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1616:363/1	0	phiX174	2718	255	50M	*	0	0	TGTTTATCCTTTGAATGGTCGCCATGATGGTGGTTATTATACCGTCAAGG	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIDIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1572:270/1	0	phiX174	3518	255	50M	*	0	0	TGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTA	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1768:715/1	0	phiX174	3118	255	50M	*	0	0	ACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCT	IIIIIII""IIIIIIIIIIIIIDIIIIIIIIIIII"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1785:1272/1	0	phiX174	3818	255	50M	*	0	0	TATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCT	III""""""IIIIIIIII""FI"IIII""II+ICI"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1673:514/1	0	phiX174	4018	255	50M	*	0	0	ATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTATTGAGGCT	IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIII1"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1652:270/1	4	*	0	0	*	*	0	0	AGCGTAAAGGCGCTCGTCTTTGGTATGTAGGACTTTGCATTGTTTAATTG	IIIIIII""IIIIIIIIIIIIIIIIIIIIIII6II"IIIIIII000IIII	XM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1572:324/1	4	*	0	0	*	*	0	0	AAGGTGCTTAAATTCGTGGGTCCTGAGCTGGCGACCCTGTTTTGTATGGC	IIIIIII""IIIIIIIIIIIIIIIIIIII+7I05I"IIIIIII000IIII	XM:i:0
+HWI-EAS91_1_30788AAXX:1:1:1634:330/1	0	phiX174	4418	255	50M	*	0	0	GGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATG	IIIIIII""IIIIIIIIIIIIIIIIIIIIIII8II"IIIIIII000IIII	XA:i:0	MD:Z:50	NM:i:0