Mercurial > repos > devteam > picard

diff picard_ReorderSam.xml @ 20:2a17c789e0a5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 5ebd6c8453b49dd6a36e372eb1eb6e323bb7ad8a
author: iuc
date: Tue, 19 Jun 2018 11:28:49 -0400
parents: 5053a18d9bc8
children: 881d7645d1bf
--- a/picard_ReorderSam.xml	Mon Apr 16 21:27:29 2018 -0400
+++ b/picard_ReorderSam.xml	Tue Jun 19 11:28:49 2018 -0400
@@ -2,7 +2,7 @@
   <description>reorder reads to match ordering in reference sequences</description>
   <macros>
     <import>picard_macros.xml</import>
-    <token name="@WRAPPER_VERSION@">0</token>
+    <token name="@WRAPPER_VERSION@">1</token>
   </macros>
   <expand macro="requirements" />
   <command detect_errors="exit_code"><![CDATA[
@@ -18,6 +18,7 @@
       picard CreateSequenceDictionary REFERENCE="${ref_fasta}" OUTPUT="${picard_dict}"
       QUIET=true
       VERBOSITY=ERROR
+      @TMPDIR_OPTION@
 
       &&
 
@@ -38,6 +39,7 @@
       VALIDATION_STRINGENCY="${validation_stringency}"
       QUIET=true
       VERBOSITY=ERROR
+      @TMPDIR_OPTION@
 
   ]]></command>