diff test-data/picard_CollectGcBiasMetrics_test1.tab @ 5:3d4f1fa26f0e draft

Uploaded
author devteam
date Tue, 16 Dec 2014 19:03:21 -0500
parents
children 05087b27692a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picard_CollectGcBiasMetrics_test1.tab	Tue Dec 16 19:03:21 2014 -0500
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+## htsjdk.samtools.metrics.StringHeader
+# picard.analysis.CollectGcBiasMetrics REFERENCE_SEQUENCE=localref.fa INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_707.dat CHART_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_708.dat SUMMARY_OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_706.dat WINDOW_SIZE=100 MINIMUM_GENOME_FRACTION=5.0E-5 ASSUME_SORTED=true IS_BISULFITE_SEQUENCED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
+## htsjdk.samtools.metrics.StringHeader
+# Started on: Sat Oct 04 11:22:58 EDT 2014
+
+## METRICS CLASS	picard.analysis.GcBiasDetailMetrics
+GC	WINDOWS	READ_STARTS	MEAN_BASE_QUALITY	NORMALIZED_COVERAGE	ERROR_BAR_WIDTH
+24	2	0	0	0	0
+25	15	0	0	0	0
+26	13	0	0	0	0
+27	18	0	0	0	0
+28	50	5	21	4.843529	2.166092
+29	47	0	0	0	0
+30	63	0	0	0	0
+31	97	4	20	1.997332	0.998666
+32	167	3	23	0.870095	0.50235
+33	178	4	22	1.088434	0.544217
+34	225	8	22	1.722144	0.60887
+35	291	5	22	0.832222	0.372181
+36	391	1	21	0.123875	0.123875
+37	506	4	24	0.382888	0.191444
+38	570	0	0	0	0
+39	640	0	0	0	0
+40	729	0	0	0	0
+41	846	1	24	0.057252	0.057252
+42	1060	1	24	0.045694	0.045694
+43	1182	13	22	0.532706	0.147746
+44	1113	8	22	0.348142	0.123087
+45	1161	7	20	0.29203	0.110377
+46	1113	5	20	0.217589	0.097309
+47	1035	8	23	0.374379	0.132363
+48	956	9	23	0.455981	0.151994
+49	913	1	24	0.053051	0.053051
+50	785	5	22	0.308505	0.137968
+51	607	5	22	0.398973	0.178426
+52	436	104	22	11.553373	1.132901
+53	354	13	23	1.778697	0.493322
+54	288	0	0	0	0
+55	232	6	21	1.252637	0.511387
+56	133	0	0	0	0
+57	108	2	24	0.89695	0.634239
+58	65	0	0	0	0
+59	38	0	0	0	0
+60	29	0	0	0	0
+61	10	0	0	0	0
+62	2	0	0	0	0
+
+