Mercurial > repos > devteam > picard
diff test-data/picard_CollectInsertSizeMetrics_test1.tab @ 5:3d4f1fa26f0e draft
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author | devteam |
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date | Tue, 16 Dec 2014 19:03:21 -0500 |
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children | 5053a18d9bc8 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picard_CollectInsertSizeMetrics_test1.tab Tue Dec 16 19:03:21 2014 -0500 @@ -0,0 +1,56 @@ +## htsjdk.samtools.metrics.StringHeader +# picard.analysis.CollectInsertSizeMetrics HISTOGRAM_FILE=/Users/anton/galaxy-central/database/files/000/dataset_699.dat DEVIATIONS=10.0 HISTOGRAM_WIDTH=500 MINIMUM_PCT=0.05 METRIC_ACCUMULATION_LEVEL=[ALL_READS] INPUT=/Users/anton/galaxy-central/database/files/000/dataset_616.dat OUTPUT=/Users/anton/galaxy-central/database/files/000/dataset_698.dat REFERENCE_SEQUENCE=/Users/anton/temp/mt.fa ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false +## htsjdk.samtools.metrics.StringHeader +# Started on: Sat Oct 04 10:14:44 EDT 2014 + +## METRICS CLASS picard.analysis.InsertSizeMetrics +MEDIAN_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP +200 28 112 251 193.969697 36.171207 99 FR 7 15 33 43 57 73 83 99 125 177 + +## HISTOGRAM java.lang.Integer +insert_size All_Reads.fr_count +112 1 +120 1 +132 2 +134 2 +138 5 +139 1 +140 1 +141 1 +151 2 +156 4 +157 1 +159 1 +161 2 +169 1 +172 1 +173 1 +177 3 +179 3 +182 3 +184 4 +185 2 +187 1 +192 1 +193 1 +194 3 +200 2 +201 5 +203 8 +205 1 +208 1 +213 4 +216 1 +222 1 +228 5 +229 2 +230 1 +231 3 +233 1 +236 2 +238 2 +241 4 +242 3 +250 2 +251 3 +