Mercurial > repos > devteam > picard
diff test-data/picard_EstimateLibraryComplexity_test1.tab @ 5:3d4f1fa26f0e draft
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author | devteam |
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date | Tue, 16 Dec 2014 19:03:21 -0500 |
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children | 05087b27692a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/picard_EstimateLibraryComplexity_test1.tab Tue Dec 16 19:03:21 2014 -0500 @@ -0,0 +1,18 @@ +## htsjdk.samtools.metrics.StringHeader +# picard.sam.markduplicates.EstimateLibraryComplexity INPUT=[/Users/anton/galaxy-central/database/files/000/dataset_951.dat] OUTPUT=/Users/anton/galaxy-central/database/files/001/dataset_1073.dat MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3472024 CREATE_INDEX=false CREATE_MD5_FILE=false +## htsjdk.samtools.metrics.StringHeader +# Started on: Fri Oct 17 13:39:31 EDT 2014 + +## METRICS CLASS picard.sam.DuplicationMetrics +LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE +Unknown 0 982 0 0 116 0 0.118126 3822 + +## HISTOGRAM java.lang.Integer +duplication_group_count Unknown +1 781 +2 65 +3 12 +4 5 +5 3 +6 1 +