diff test-data/picard_EstimateLibraryComplexity_test1.tab @ 5:3d4f1fa26f0e draft

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author devteam
date Tue, 16 Dec 2014 19:03:21 -0500
parents
children 05087b27692a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/picard_EstimateLibraryComplexity_test1.tab	Tue Dec 16 19:03:21 2014 -0500
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+## htsjdk.samtools.metrics.StringHeader
+# picard.sam.markduplicates.EstimateLibraryComplexity INPUT=[/Users/anton/galaxy-central/database/files/000/dataset_951.dat] OUTPUT=/Users/anton/galaxy-central/database/files/001/dataset_1073.dat MIN_IDENTICAL_BASES=5 MAX_DIFF_RATE=0.03 MIN_MEAN_QUALITY=20 MAX_GROUP_RATIO=500 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).*. OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT    COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=3472024 CREATE_INDEX=false CREATE_MD5_FILE=false
+## htsjdk.samtools.metrics.StringHeader
+# Started on: Fri Oct 17 13:39:31 EDT 2014
+
+## METRICS CLASS	picard.sam.DuplicationMetrics
+LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
+Unknown	0	982	0	0	116	0	0.118126	3822
+
+## HISTOGRAM	java.lang.Integer
+duplication_group_count	Unknown
+1	781
+2	65
+3	12
+4	5
+5	3
+6	1
+