Mercurial > repos > devteam > picard
diff picard_CollectInsertSizeMetrics.xml @ 19:5053a18d9bc8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 7036343b9ac0a0ffc2ce4f6db465b9298ef05e73
| author | iuc |
|---|---|
| date | Mon, 16 Apr 2018 21:27:29 -0400 |
| parents | 465cbb0cf2eb |
| children | 2a17c789e0a5 |
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--- a/picard_CollectInsertSizeMetrics.xml Sat Jan 20 08:28:24 2018 -0500 +++ b/picard_CollectInsertSizeMetrics.xml Mon Apr 16 21:27:29 2018 -0400 @@ -1,10 +1,11 @@ -<tool name="CollectInsertSizeMetrics" id="picard_CollectInsertSizeMetrics" version="@TOOL_VERSION@.0"> +<tool name="CollectInsertSizeMetrics" id="picard_CollectInsertSizeMetrics" version="@TOOL_VERSION@.@WRAPPER_VERSION@"> <description>plots distribution of insert sizes</description> <macros> <import>picard_macros.xml</import> + <token name="@WRAPPER_VERSION@">0</token> </macros> <expand macro="requirements"> - <requirement type="package" version="3.3.1">r</requirement> + <requirement type="package" version="3.4.1">r-base</requirement> </expand> <command detect_errors="exit_code"><![CDATA[ @java_options@ @@ -13,11 +14,7 @@ #set $reference_fasta_filename = "localref.fa" - #if str( $reference_source.reference_source_selector ) == "history": - ln -s "${reference_source.ref_file}" "${reference_fasta_filename}" && - #else: - #set $reference_fasta_filename = str( $reference_source.ref_file.fields.path ) - #end if + @handle_reference_source@ picard CollectInsertSizeMetrics @@ -132,6 +129,5 @@ @more_info@ </help> + <expand macro="citations" /> </tool> - -