Mercurial > repos > devteam > picard

diff picard_MarkDuplicates.xml @ 13:7e6fd3d0f16e draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/picard commit bf94a1505c131fb3f67c867b6e1d886780efa42e
author devteam
date Tue, 06 Dec 2016 10:04:41 -0500
parents 05087b27692a
children 465cbb0cf2eb
line wrap: on
line diff
--- a/picard_MarkDuplicates.xml	Sun Nov 27 15:11:50 2016 -0500
+++ b/picard_MarkDuplicates.xml	Tue Dec 06 10:04:41 2016 -0500
@@ -6,11 +6,11 @@
   <expand macro="requirements" />
   <command detect_errors="exit_code"><![CDATA[
     @java_options@
-
+    @symlink_element_identifier@
     picard
     MarkDuplicates
 
-    INPUT="${inputFile}"
+    INPUT='$inputFile.element_identifier'
     OUTPUT="${outFile}"
 
     METRICS_FILE="${metrics_file}"