--- a/picard_ValidateSamFile.xml	Wed Feb 19 14:27:00 2020 -0500
+++ b/picard_ValidateSamFile.xml	Sat Jan 15 12:39:30 2022 +0000
@@ -80,61 +80,61 @@
     <param name="ignore" type="select" multiple="true" display="checkboxes" label="Select validation error types to ignore" help="IGNORE">
       <option value="INVALID_QUALITY_FORMAT">INVALID_QUALITY_FORMAT</option>
       <option value="INVALID_FLAG_PROPER_PAIR">INVALID_FLAG_PROPER_PAIR</option>
-      <option value="INVALID_FLAG_MATE_UNMAPPED"/>
-      <option value="MISMATCH_FLAG_MATE_UNMAPPED"/>
-      <option value="INVALID_FLAG_MATE_NEG_STRAND"/>
-      <option value="MISMATCH_FLAG_MATE_NEG_STRAND"/>
-      <option value="INVALID_FLAG_FIRST_OF_PAIR"/>
-      <option value="INVALID_FLAG_SECOND_OF_PAIR"/>
-      <option value="PAIRED_READ_NOT_MARKED_AS_FIRST_OR_SECOND"/>
-      <option value="INVALID_FLAG_NOT_PRIM_ALIGNMENT"/>
-      <option value="INVALID_FLAG_SUPPLEMENTARY_ALIGNMENT"/>
-      <option value="INVALID_FLAG_READ_UNMAPPED"/>
-      <option value="INVALID_INSERT_SIZE"/>
-      <option value="INVALID_MAPPING_QUALITY"/>
-      <option value="INVALID_CIGAR"/>
-      <option value="ADJACENT_INDEL_IN_CIGAR"/>
-      <option value="INVALID_MATE_REF_INDEX"/>
-      <option value="MISMATCH_MATE_REF_INDEX"/>
-      <option value="INVALID_REFERENCE_INDEX"/>
-      <option value="INVALID_ALIGNMENT_START"/>
-      <option value="MISMATCH_MATE_ALIGNMENT_START"/>
-      <option value="MATE_FIELD_MISMATCH"/>
-      <option value="INVALID_TAG_NM"/>
-      <option value="MISSING_TAG_NM"/>
-      <option value="MISSING_HEADER"/>
-      <option value="MISSING_SEQUENCE_DICTIONARY"/>
-      <option value="MISSING_READ_GROUP"/>
-      <option value="RECORD_OUT_OF_ORDER"/>
-      <option value="READ_GROUP_NOT_FOUND"/>
-      <option value="RECORD_MISSING_READ_GROUP"/>
-      <option value="INVALID_INDEXING_BIN"/>
-      <option value="MISSING_VERSION_NUMBER"/>
-      <option value="INVALID_VERSION_NUMBER"/>
-      <option value="TRUNCATED_FILE"/>
-      <option value="MISMATCH_READ_LENGTH_AND_QUALS_LENGTH"/>
-      <option value="EMPTY_READ"/>
-      <option value="CIGAR_MAPS_OFF_REFERENCE"/>
-      <option value="MISMATCH_READ_LENGTH_AND_E2_LENGTH"/>
-      <option value="MISMATCH_READ_LENGTH_AND_U2_LENGTH"/>
-      <option value="E2_BASE_EQUALS_PRIMARY_BASE"/>
-      <option value="BAM_FILE_MISSING_TERMINATOR_BLOCK"/>
-      <option value="UNRECOGNIZED_HEADER_TYPE"/>
-      <option value="POORLY_FORMATTED_HEADER_TAG"/>
-      <option value="HEADER_TAG_MULTIPLY_DEFINED"/>
-      <option value="HEADER_RECORD_MISSING_REQUIRED_TAG"/>
-      <option value="INVALID_DATE_STRING"/>
-      <option value="TAG_VALUE_TOO_LARGE"/>
-      <option value="INVALID_INDEX_FILE_POINTER"/>
-      <option value="INVALID_PREDICTED_MEDIAN_INSERT_SIZE"/>
-      <option value="DUPLICATE_READ_GROUP_ID"/>
-      <option value="MISSING_PLATFORM_VALUE"/>
-      <option value="INVALID_PLATFORM_VALUE"/>
-      <option value="DUPLICATE_PROGRAM_GROUP_ID"/>
-      <option value="MATE_NOT_FOUND"/>
-      <option value="MATES_ARE_SAME_END"/>
-      <option value="MISMATCH_MATE_CIGAR_STRING"/>
-      <option value="MATE_CIGAR_STRING_INVALID_PRESENCE"/>
+      <option value="INVALID_FLAG_MATE_UNMAPPED">INVALID_FLAG_MATE_UNMAPPED</option>
+      <option value="MISMATCH_FLAG_MATE_UNMAPPED">MISMATCH_FLAG_MATE_UNMAPPED</option>
+      <option value="INVALID_FLAG_MATE_NEG_STRAND">INVALID_FLAG_MATE_NEG_STRAND</option>
+      <option value="MISMATCH_FLAG_MATE_NEG_STRAND">MISMATCH_FLAG_MATE_NEG_STRAND</option>
+      <option value="INVALID_FLAG_FIRST_OF_PAIR">INVALID_FLAG_FIRST_OF_PAIR</option>
+      <option value="INVALID_FLAG_SECOND_OF_PAIR">INVALID_FLAG_SECOND_OF_PAIR</option>
+      <option value="PAIRED_READ_NOT_MARKED_AS_FIRST_OR_SECOND">PAIRED_READ_NOT_MARKED_AS_FIRST_OR_SECOND</option>
+      <option value="INVALID_FLAG_NOT_PRIM_ALIGNMENT">INVALID_FLAG_NOT_PRIM_ALIGNMENT</option>
+      <option value="INVALID_FLAG_SUPPLEMENTARY_ALIGNMENT">INVALID_FLAG_SUPPLEMENTARY_ALIGNMENT</option>
+      <option value="INVALID_FLAG_READ_UNMAPPED">INVALID_FLAG_READ_UNMAPPED</option>
+      <option value="INVALID_INSERT_SIZE">INVALID_INSERT_SIZE</option>
+      <option value="INVALID_MAPPING_QUALITY">INVALID_MAPPING_QUALITY</option>
+      <option value="INVALID_CIGAR">INVALID_CIGAR</option>
+      <option value="ADJACENT_INDEL_IN_CIGAR">ADJACENT_INDEL_IN_CIGAR</option>
+      <option value="INVALID_MATE_REF_INDEX">INVALID_MATE_REF_INDEX</option>
+      <option value="MISMATCH_MATE_REF_INDEX">MISMATCH_MATE_REF_INDEX</option>
+      <option value="INVALID_REFERENCE_INDEX">INVALID_REFERENCE_INDEX</option>
+      <option value="INVALID_ALIGNMENT_START">INVALID_ALIGNMENT_START</option>
+      <option value="MISMATCH_MATE_ALIGNMENT_START">MISMATCH_MATE_ALIGNMENT_START</option>
+      <option value="MATE_FIELD_MISMATCH">MATE_FIELD_MISMATCH</option>
+      <option value="INVALID_TAG_NM">INVALID_TAG_NM</option>
+      <option value="MISSING_TAG_NM">MISSING_TAG_NM</option>
+      <option value="MISSING_HEADER">MISSING_HEADER</option>
+      <option value="MISSING_SEQUENCE_DICTIONARY">MISSING_SEQUENCE_DICTIONARY</option>
+      <option value="MISSING_READ_GROUP">MISSING_READ_GROUP</option>
+      <option value="RECORD_OUT_OF_ORDER">RECORD_OUT_OF_ORDER</option>
+      <option value="READ_GROUP_NOT_FOUND">READ_GROUP_NOT_FOUND</option>
+      <option value="RECORD_MISSING_READ_GROUP">RECORD_MISSING_READ_GROUP</option>
+      <option value="INVALID_INDEXING_BIN">INVALID_INDEXING_BIN</option>
+      <option value="MISSING_VERSION_NUMBER">MISSING_VERSION_NUMBER</option>
+      <option value="INVALID_VERSION_NUMBER">INVALID_VERSION_NUMBER</option>
+      <option value="TRUNCATED_FILE">TRUNCATED_FILE</option>
+      <option value="MISMATCH_READ_LENGTH_AND_QUALS_LENGTH">MISMATCH_READ_LENGTH_AND_QUALS_LENGTH</option>
+      <option value="EMPTY_READ">EMPTY_READ</option>
+      <option value="CIGAR_MAPS_OFF_REFERENCE">CIGAR_MAPS_OFF_REFERENCE</option>
+      <option value="MISMATCH_READ_LENGTH_AND_E2_LENGTH">MISMATCH_READ_LENGTH_AND_E2_LENGTH</option>
+      <option value="MISMATCH_READ_LENGTH_AND_U2_LENGTH">MISMATCH_READ_LENGTH_AND_U2_LENGTH</option>
+      <option value="E2_BASE_EQUALS_PRIMARY_BASE">E2_BASE_EQUALS_PRIMARY_BASE</option>
+      <option value="BAM_FILE_MISSING_TERMINATOR_BLOCK">BAM_FILE_MISSING_TERMINATOR_BLOCK</option>
+      <option value="UNRECOGNIZED_HEADER_TYPE">UNRECOGNIZED_HEADER_TYPE</option>
+      <option value="POORLY_FORMATTED_HEADER_TAG">POORLY_FORMATTED_HEADER_TAG</option>
+      <option value="HEADER_TAG_MULTIPLY_DEFINED">HEADER_TAG_MULTIPLY_DEFINED</option>
+      <option value="HEADER_RECORD_MISSING_REQUIRED_TAG">HEADER_RECORD_MISSING_REQUIRED_TAG</option>
+      <option value="INVALID_DATE_STRING">INVALID_DATE_STRING</option>
+      <option value="TAG_VALUE_TOO_LARGE">TAG_VALUE_TOO_LARGE</option>
+      <option value="INVALID_INDEX_FILE_POINTER">INVALID_INDEX_FILE_POINTER</option>
+      <option value="INVALID_PREDICTED_MEDIAN_INSERT_SIZE">INVALID_PREDICTED_MEDIAN_INSERT_SIZE</option>
+      <option value="DUPLICATE_READ_GROUP_ID">DUPLICATE_READ_GROUP_ID</option>
+      <option value="MISSING_PLATFORM_VALUE">MISSING_PLATFORM_VALUE</option>
+      <option value="INVALID_PLATFORM_VALUE">INVALID_PLATFORM_VALUE</option>
+      <option value="DUPLICATE_PROGRAM_GROUP_ID">DUPLICATE_PROGRAM_GROUP_ID</option>
+      <option value="MATE_NOT_FOUND">MATE_NOT_FOUND</option>
+      <option value="MATES_ARE_SAME_END">MATES_ARE_SAME_END</option>
+      <option value="MISMATCH_MATE_CIGAR_STRING">MISMATCH_MATE_CIGAR_STRING</option>
+      <option value="MATE_CIGAR_STRING_INVALID_PRESENCE">MATE_CIGAR_STRING_INVALID_PRESENCE</option>
     </param>
     <param name="max_output" type="integer" value="100" label="The maximum number of lines output in verbose mode" help="MAX_OUTPUT; default=100"/>
     <param name="ignore_warnings" type="boolean" label="If true, only report errors and ignore warnings" help="IGNORE_WARNINGS; default=False"/>