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diff picard_CollectRnaSeqMetrics.xml @ 22:f6ced08779c4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit b6e11aa8e5fd1da27909207ec4f09cbbac467495
author iuc
date Fri, 29 Mar 2019 08:34:36 -0400
parents 2a17c789e0a5
children a1f0b3f4b781
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--- a/picard_CollectRnaSeqMetrics.xml	Tue Oct 16 11:49:10 2018 -0400
+++ b/picard_CollectRnaSeqMetrics.xml	Fri Mar 29 08:34:36 2019 -0400
@@ -23,7 +23,7 @@
 
       #if str($gene_reference_source.gene_reference_source_selector) == "gtf"
         #if $gene_reference_source.refFlat.ext != 'gff3'
-            gtfToGenePred '${gene_reference_source.refFlat}' refFlat.tab.raw &&
+            gtfToGenePred -genePredExt '${gene_reference_source.refFlat}' refFlat.tab.raw &&
         #else
             gff3ToGenePred '${gene_reference_source.refFlat}' refFlat.tab.raw &&
         #end if