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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/picard commit 9ecbbb878d68a980ba35a90865e524c723ca3ed8
author | iuc |
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date | Sun, 03 Mar 2024 16:06:11 +0000 |
parents | 5053a18d9bc8 |
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## htsjdk.samtools.metrics.StringHeader # MeanQualityByCycle CHART_OUTPUT=/tmp/tmpo37chtct/job_working_directory/000/61/outputs/dataset_f7c137d5-bc0d-40a8-837e-d81930c88148.dat ALIGNED_READS_ONLY=false PF_READS_ONLY=false INPUT=picard_MeanQualityByCycle_bam OUTPUT=/tmp/tmpo37chtct/job_working_directory/000/61/outputs/dataset_e33b30c8-e05a-4609-ba6a-f4efb014ed6f.dat ASSUME_SORTED=true VERBOSITY=ERROR QUIET=true VALIDATION_STRINGENCY=LENIENT REFERENCE_SEQUENCE=localref.fa STOP_AFTER=0 COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false USE_JDK_DEFLATER=false USE_JDK_INFLATER=false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat Mar 02 14:48:55 GMT 2024 ## HISTOGRAM java.lang.Integer CYCLE MEAN_QUALITY 1 30.92 2 32.06 3 31.93 4 32.2 5 32.11 6 35.73 7 35.77 8 35.93 9 34.98 10 35.63 11 35.38 12 36.14 13 37.72 14 37.39 15 37.27 16 37.29 17 37.21 18 37.13 19 37.28 20 36.9 21 37.12 22 36.77 23 37.81 24 37.64 25 38.32 26 38.15 27 37.97 28 37.8 29 37.86 30 37.85 31 38.21 32 38.36 33 38.24 34 38.2 35 38.04 36 37.52 37 37.68 38 38.12 39 37.46 40 37.66 41 37.23 42 37.25 43 37.28 44 37.61 45 37.49 46 37.67 47 38.02 48 37.43 49 37.91 50 38.02 51 38.01 52 37.97 53 37.53 54 37.46 55 37.83 56 37.38 57 37.54 58 37.39 59 37.69 60 37.99 61 37.65 62 37.19 63 38.03 64 37.54 65 38.06 66 37.6 67 37.17 68 37.91 69 37.51 70 37.97 71 37.78 72 37.88 73 37.54 74 36.84 75 37.3 76 37.89 77 37.64 78 37.54 79 37.73 80 37.23 81 36.97 82 37.45 83 36.68 84 36.87 85 36.82 86 37.47 87 37.18 88 37.42 89 37.4 90 36.42 91 37.12 92 37.63 93 37.37 94 37.38 95 37.55 96 37.84 97 38.14 98 37.42 99 38.12 100 36.51 101 36.54 102 37.02 103 36.53 104 37.57 105 37.4 106 37.28 107 37.32 108 37.44 109 37.4 110 36.82 111 37.73 112 37.42 113 37.53 114 36.52 115 36.44 116 36.06 117 37.45 118 36.9 119 36.53 120 37.15 121 36.28 122 37.27 123 37.05 124 37.34 125 35.58 126 36.2 127 36.72 128 36.17 129 36.99 130 36.39 131 37.17 132 36.61 133 36.34 134 36.7 135 36.18 136 36.07 137 37.15 138 36.16 139 35.52 140 36.35 141 36.77 142 35.8 143 36.47 144 36.07 145 36.32 146 36.53 147 36.16 148 35.99 149 35.58 150 35.99 151 35.37 152 34.34 153 34.51 154 35.34 155 35.83 156 36.26 157 36.28 158 36.68 159 36.18 160 36.44 161 35.34 162 34.81 163 35.58 164 35.72 165 35.63 166 36.01 167 35.22 168 35.82 169 35.29 170 35 171 35.46 172 34.78 173 34.54 174 33.67 175 34.51 176 34.47 177 35.38 178 34.74 179 35.6 180 34.5 181 34.27 182 34.26 183 35.11 184 34.54 185 33.99 186 33.22 187 33.8 188 33.43 189 34.4 190 32.97 191 33.59 192 33.29 193 32.52 194 34.05 195 33.54 196 32.56 197 33.88 198 33.03 199 32.74 200 31.84 201 33.09 202 32.95 203 32.85 204 33.79 205 33.35 206 33.05 207 32.71 208 32.83 209 32.76 210 31.26 211 31.29 212 32.19 213 33.79 214 33.22 215 32.27 216 32.03 217 31.8 218 32.67 219 32.57 220 32.32 221 31.24 222 31.27 223 31.22 224 31.59 225 30.77 226 30.36 227 30.66 228 30.16 229 30.91 230 32.04 231 32.24 232 32.04 233 30.92 234 30.78 235 31.59 236 31.73 237 32.32 238 30.25 239 29.03 240 29.61 241 30.03 242 29.38 243 28.82 244 29.32 245 28.41 246 28.49 247 29.24 248 29.71 249 29.51 250 28.9 251 20.13 252 32.02 253 33.03 254 33.14 255 33.32 256 32.92 257 35.86 258 36.02 259 35.97 260 35.76 261 36.03 262 35.9 263 36.35 264 37.5 265 37.28 266 37.61 267 37.7 268 37.66 269 37.48 270 37.68 271 37.59 272 37.66 273 37.73 274 38.05 275 38.42 276 38.12 277 38.37 278 38.41 279 38.32 280 38.39 281 38.2 282 38.26 283 38.34 284 38.22 285 38.37 286 38.33 287 38.39 288 38.17 289 38.1 290 38.16 291 37.86 292 37.77 293 38.23 294 37.79 295 37.64 296 38.02 297 37.77 298 38.2 299 38.02 300 37.83 301 38.26 302 38.2 303 38.04 304 37.86 305 38.14 306 38.25 307 37.88 308 38.39 309 38.3 310 37.82 311 37.71 312 38.23 313 38.07 314 38.06 315 37.71 316 37.92 317 37.78 318 37.89 319 37.37 320 37.2 321 37.59 322 37.88 323 37.35 324 37.8 325 37.11 326 37.34 327 36.97 328 37.34 329 37.27 330 37.6 331 37.4 332 37.31 333 37.57 334 37.12 335 37.46 336 37.45 337 37.47 338 37.27 339 37.62 340 37.6 341 37.78 342 37.51 343 37.81 344 37.92 345 37.86 346 37.22 347 37.75 348 37.5 349 37.12 350 37.2 351 36.71 352 37.26 353 37.27 354 37.96 355 38 356 37.49 357 37.61 358 36.68 359 37.02 360 37.23 361 36.35 362 36.78 363 36.51 364 36.98 365 36.74 366 36.98 367 36.4 368 36.89 369 37.09 370 36.85 371 36.94 372 37.03 373 37.27 374 36.99 375 37.22 376 36.68 377 37.01 378 37.16 379 36.63 380 37.02 381 36.7 382 37.36 383 36.97 384 36.61 385 36.4 386 36.31 387 36.38 388 36.57 389 36.17 390 35.9 391 36.52 392 36.31 393 35.73 394 35.6 395 35.14 396 35.58 397 34.47 398 36.4 399 36.35 400 35.78 401 35.94 402 36.15 403 35.06 404 34.94 405 35.2 406 35.3 407 35.66 408 36.08 409 35.26 410 35.19 411 35.12 412 34.92 413 35.04 414 34.72 415 35.31 416 35.41 417 35.76 418 34.93 419 34.61 420 31.67 421 33.03 422 34.43 423 33.21 424 34.64 425 34.09 426 33.68 427 33.42 428 33.14 429 34.06 430 33.51 431 33.3 432 34.18 433 34.35 434 34.16 435 34.4 436 33.83 437 32.62 438 32.52 439 32.2 440 31.23 441 30.53 442 31.09 443 31.4 444 32.42 445 32.48 446 32.09 447 32.82 448 32.44 449 31.59 450 31.29 451 31.51 452 31.44 453 29.73 454 30.59 455 31.49 456 29.87 457 30.48 458 30.45 459 31.44 460 29.87 461 30.61 462 30.39 463 30.65 464 28.86 465 28.55 466 28.77 467 30 468 30.1 469 30.27 470 31.21 471 30.62 472 31.14 473 29.87 474 28.56 475 28.48 476 29.52 477 28.14 478 28.27 479 28.02 480 28.57 481 27.39 482 28.5 483 28.68 484 27.18 485 27.42 486 27.09 487 25.93 488 27.18 489 26.68 490 26.65 491 26.27 492 25.41 493 25.3 494 26.21 495 26.68 496 26.32 497 25.83 498 24.29 499 24.26 500 24.58 501 24.86 502 19.15