directory /test-data/ @ 25:7d34178f2812 draft

name size permissions
[up] drwxr-xr-x
dir. cached_locally/ drwxr-xr-x
file err_summary 994 -rw-r--r--
file picard_ARRG.bam 38188 -rw-r--r--
file picard_ARRG_test1.bam 39453 -rw-r--r--
file picard_AddCommentsToBam.bam 38188 -rw-r--r--
file picard_AddCommentsToBam_test1.bam 38653 -rw-r--r--
file picard_BedToIntervalList.bed 113 -rw-r--r--
file picard_BedToIntervalList_ref.fa 16813 -rw-r--r--
file picard_BedToIntervalList_test1.pif 298 -rw-r--r--
file picard_CASM.bam 38188 -rw-r--r--
file picard_CASM_ref.fa 16882 -rw-r--r--
file picard_CASM_test1.tab 1867 -rw-r--r--
file picard_CleanSam.bam 38188 -rw-r--r--
file picard_CleanSam_test1.bam 39239 -rw-r--r--
file picard_CollectBaseDistributionByCycle.bam 38188 -rw-r--r--
file picard_CollectBaseDistributionByCycle_ref.fa 16882 -rw-r--r--
file picard_CollectBaseDistributionByCycle_test1.tab 17685 -rw-r--r--
file picard_CollectGcBiasMetrics.bam 38188 -rw-r--r--
file picard_CollectGcBiasMetrics_ref.fa 16882 -rw-r--r--
file picard_CollectGcBiasMetrics_test1.tab 4412 -rw-r--r--
file picard_CollectHsMetrics.baits 107 -rw-r--r--
file picard_CollectHsMetrics.bam 44515 -rw-r--r--
file picard_CollectHsMetrics.target 107 -rw-r--r--
file picard_CollectHsMetrics_test1.tab 3652 -rw-r--r--
file picard_CollectInsertSizeMetrics.bam 38188 -rw-r--r--
file picard_CollectInsertSizeMetrics_ref.fa 16882 -rw-r--r--
file picard_CollectInsertSizeMetrics_test1.tab 1576 -rw-r--r--
file picard_CollectRnaSeqMetrics.bam 44515 -rw-r--r--
file picard_CollectRnaSeqMetrics.gff3 5458 -rw-r--r--
file picard_CollectRnaSeqMetrics.gtf 42079 -rw-r--r--
file picard_CollectRnaSeqMetrics.refFlat 1586 -rw-r--r--
file picard_CollectRnaSeqMetrics_ref.fa 16813 -rw-r--r--
file picard_CollectRnaSeqMetrics_test1.tab 2752 -rw-r--r--
file picard_CollectRnaSeqMetrics_test2.tab 2756 -rw-r--r--
file picard_CollectRnaSeqMetrics_test3.tab 2740 -rw-r--r--
file picard_CollectWgsMetrics.bam 44515 -rw-r--r--
file picard_CollectWgsMetrics_ref.fa 16813 -rw-r--r--
file picard_CollectWgsMetrics_test1.tab 2730 -rw-r--r--
file picard_DownsampleSam.bam 38188 -rw-r--r--
file picard_DownsampleSam_test1.bam 5545 -rw-r--r--
file picard_EstimateLibraryComplexity.bam 212398 -rw-r--r--
file picard_EstimateLibraryComplexity_test1.tab 1133 -rw-r--r--
file picard_FastqToSam_read1.fq 552531 -rw-r--r--
file picard_FastqToSam_read2.fq 552531 -rw-r--r--
file picard_FastqToSam_test1.bam 280883 -rw-r--r--
file picard_FilterSamReads.bam 24667 -rw-r--r--
file picard_FilterSamReads_exclude_reads_test2.bam 20947 -rw-r--r--
file picard_FilterSamReads_include_reads_test1.bam 5342 -rw-r--r--
file picard_FilterSamReads_read_list_file.tab 867 -rw-r--r--
file picard_FixMateInformation.bam 24667 -rw-r--r--
file picard_FixMateInformation_test1.bam 25426 -rw-r--r--
file picard_MarkDuplicates.bam 24667 -rw-r--r--
file picard_MarkDuplicatesWithMateCigar.bam 25357 -rw-r--r--
file picard_MarkDuplicatesWithMateCigar_test1.bam 26149 -rw-r--r--
file picard_MarkDuplicates_test1.bam 25937 -rw-r--r--
file picard_MarkDuplicates_test2.bam 26420 -rw-r--r--
file picard_MeanQualityByCycle.bam 24667 -rw-r--r--
file picard_MeanQualityByCycle_ref.fa 16813 -rw-r--r--
file picard_MeanQualityByCycle_test1.tab 5530 -rw-r--r--
file picard_MergeBamAlignment_aligned.bam 24667 -rw-r--r--
file picard_MergeBamAlignment_ref.fa 16813 -rw-r--r--
file picard_MergeBamAlignment_test1.bam 25603 -rw-r--r--
file picard_MergeBamAlignment_unaligned.bam 24364 -rw-r--r--
file picard_MergeSamFiles_input1.bam 212398 -rw-r--r--
file picard_MergeSamFiles_input2.bam 212604 -rw-r--r--
file picard_MergeSamFiles_input3.bam 224562 -rw-r--r--
file picard_MergeSamFiles_test1.bam 664142 -rw-r--r--
file picard_NormalizeFasta_ref.fa 16813 -rw-r--r--
file picard_NormalizeFasta_test1.fa 16990 -rw-r--r--
file picard_QualityScoreDistribution.bam 212373 -rw-r--r--
file picard_QualityScoreDistribution_ref.fa 16813 -rw-r--r--
file picard_QualityScoreDistribution_test1.tab 985 -rw-r--r--
file picard_ReorderSam.bam 212373 -rw-r--r--
file picard_ReorderSam_ref.fa 16813 -rw-r--r--
file picard_ReorderSam_test1.bam 217139 -rw-r--r--
file picard_ReplaceSamHeader.bam 212398 -rw-r--r--
file picard_ReplaceSamHeader_header.bam 212604 -rw-r--r--
file picard_ReplaceSamHeader_test1.bam 217089 -rw-r--r--
file picard_RevertOriginalBaseQualitiesAndAddMateCigar.bam 212398 -rw-r--r--
file picard_RevertOriginalBaseQualitiesAndAddMateCigar_test1.bam 217218 -rw-r--r--
file picard_RevertSam.bam 212398 -rw-r--r--
file picard_RevertSam_test1.bam 216183 -rw-r--r--
file picard_SamToFastq.bam 218440 -rw-r--r--
file picard_SamToFastq_test1.fq 986280 -rw-r--r--
file picard_SortSam.bam 212398 -rw-r--r--
file picard_SortSam_test1.bam 217089 -rw-r--r--
file picard_SortSam_test1.sam 1017572 -rw-r--r--
file picard_ValidateSamFile.bam 212373 -rw-r--r--
file picard_ValidateSamFile_ref.fa 16813 -rw-r--r--
file picard_ValidateSamFile_test1.txt 10304 -rw-r--r--
file pos_details 1784 -rw-r--r--
file pos_summary 1663 -rw-r--r--
file pre_details 1663 -rw-r--r--
file pre_summary 1670 -rw-r--r--