Mercurial > repos > devteam > pileup_parser

comparison test-data/pileup_parser.10col.20-3-yes-yes-yes-no.pileup.out @ 0:ff1ba9b75337 draft

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author devteam
date Mon, 26 Aug 2013 15:14:34 -0400
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-1:000000000000 0:ff1ba9b75337
1 chrM 13 14 A A 56 0 25 18 16 0 1 0 17 1
2 chrM 18 19 T T 55 0 25 20 0 0 1 18 19 1
3 chrM 35 36 A A 103 0 25 30 27 0 1 0 28 1
4 chrM 58 59 A A 50 0 24 16 12 1 0 0 13 1
5 chrM 59 60 C C 50 0 24 16 1 15 0 0 16 1
6 chrM 157 158 A G 117 117 19 62 0 0 56 0 56 56
7 chrM 170 171 T T 141 0 21 46 0 0 1 45 46 1
8 chrM 172 173 A A 130 0 20 42 36 1 0 0 37 1
9 chrM 173 174 A A 122 0 21 40 38 1 0 0 39 1
10 chrM 187 188 A A 36 0 21 13 11 0 1 0 12 1
11 chrM 195 196 T T 17 0 19 5 0 0 1 4 5 1
12 chrM 284 285 G G 34 0 15 11 0 0 10 1 11 1
13 chrM 285 286 T T 33 0 15 11 1 0 0 7 8 1
14 chrM 303 304 G G 41 0 18 13 1 0 11 0 12 1
15 chrM 310 311 T T 41 0 18 13 0 1 0 11 12 1
16 chrM 347 348 T T 4 0 20 3 1 0 0 2 3 1
17 chrM 354 355 A C 14 36 25 4 1 3 0 0 4 3
18 chrM 355 356 T C 39 39 25 4 0 4 0 0 4 4
19 chrM 380 381 C T 77 108 25 28 0 0 0 24 24 24
20 chrM 383 384 A A 76 0 25 30 25 1 0 0 26 1
21 chrM 385 386 A G 88 120 25 32 0 0 29 0 29 29
22 chrM 414 415 C T 75 75 25 16 0 0 0 15 15 15
23 chrM 464 465 C C 169 0 25 65 1 58 0 0 59 1
24 chrM 468 469 T T 207 0 25 66 0 0 1 56 57 1
25 chrM 471 472 C C 187 0 25 72 1 64 0 0 65 1
26 chrM 490 491 C C 212 0 23 79 0 73 0 1 74 1
27 chrM 506 507 A A 150 0 21 76 64 1 0 0 65 1
28 chrM 510 511 C C 213 0 21 72 1 68 0 0 69 1
29 chrM 526 527 A A 164 0 22 58 51 1 0 0 52 1
30 chrM 527 528 A A 164 0 22 58 48 0 1 0 49 1
31 chrM 536 537 A A 138 0 23 49 42 1 0 0 43 1
32 chrM 557 558 T T 83 0 23 27 0 0 1 23 24 1
33 chrM 606 607 G G 105 0 24 43 0 0 33 2 35 2
34 chrM 618 619 T T 117 0 24 48 0 1 0 34 35 1
35 chrM 627 628 G G 108 0 22 57 1 0 51 0 52 1
36 chrM 659 660 C C 166 0 19 58 1 53 0 0 54 1
37 chrM 668 669 C C 135 0 19 42 1 40 1 0 42 2
38 chrM 713 714 A A 127 0 23 96 90 1 0 0 91 1
39 chrM 719 720 T T 130 0 24 96 0 0 1 77 78 1
40 chrM 736 737 A A 98 0 24 98 87 1 0 0 88 1
41 chrM 747 748 A A 97 0 25 86 80 1 0 0 81 1
42 chrM 749 750 A A 93 0 25 77 71 2 0 0 73 2
43 chrM 759 760 T T 106 0 25 86 0 0 1 69 70 1
44 chrM 762 763 A A 99 0 25 83 76 1 0 0 77 1
45 chrM 763 764 G G 107 0 25 86 1 0 75 0 76 1
46 chrM 764 765 G G 88 0 25 77 0 0 68 1 69 1
47 chrM 767 768 T T 102 0 25 71 1 0 0 65 66 1
48 chrM 777 778 G G 108 0 25 63 0 0 58 1 59 1
49 chrM 784 785 A A 99 0 25 63 51 1 0 0 52 1
50 chrM 790 791 G G 155 0 25 60 0 0 55 1 56 1
51 chrM 794 795 T T 212 0 25 74 1 0 0 62 63 1
52 chrM 807 808 C C 226 0 22 132 1 110 0 0 111 1
53 chrM 808 809 T T 242 0 22 134 0 1 0 109 110 1
54 chrM 809 810 A A 243 0 22 144 128 0 1 0 129 1
55 chrM 814 815 C C 246 0 22 160 1 142 0 0 143 1
56 chrM 815 816 A A 255 0 22 169 159 0 1 0 160 1
57 chrM 816 817 A A 254 0 22 171 150 1 0 0 151 1
58 chrM 819 820 A A 255 0 22 183 157 0 0 1 158 1
59 chrM 822 823 T T 252 0 22 192 0 1 0 171 172 1
60 chrM 825 826 A A 255 0 22 198 177 0 1 0 178 1
61 chrM 829 830 G G 255 0 22 198 1 0 185 0 186 1
62 chrM 837 838 G G 255 0 22 169 0 0 160 1 161 1
63 chrM 841 842 C C 239 0 22 173 1 156 0 0 157 1
64 chrM 856 857 C C 254 0 23 124 1 114 0 0 115 1
65 chrM 858 859 A A 250 0 23 118 110 0 1 0 111 1
66 chrM 859 860 A A 255 0 23 115 101 1 0 0 102 1
67 chrM 864 865 G G 255 0 23 115 1 0 109 0 110 1
68 chrM 866 867 A A 224 0 23 105 81 1 0 0 82 1
69 chrM 872 873 C C 206 0 23 94 1 84 0 0 85 1
70 chrM 873 874 A A 208 0 23 94 80 1 0 0 81 1
71 chrM 931 932 C C 53 0 23 22 2 18 0 0 20 2
72 chrM 936 937 C C 98 0 24 31 1 21 0 0 22 1
73 chrM 950 951 C C 191 0 23 76 1 61 0 0 62 1
74 chrM 951 952 A A 223 0 24 81 78 2 0 0 80 2
75 chrM 952 953 C C 179 0 24 86 2 67 0 0 69 2
76 chrM 956 957 T T 237 0 23 110 0 0 1 91 92 1
77 chrM 957 958 C C 251 0 23 117 1 96 0 0 97 1
78 chrM 966 967 A A 246 0 23 125 119 1 0 0 120 1
79 chrM 974 975 C C 255 0 23 125 1 111 1 0 113 2
80 chrM 980 981 C C 247 0 23 123 0 111 1 0 112 1
81 chrM 981 982 C C 255 0 23 122 2 106 0 0 108 2
82 chrM 982 983 C C 252 0 23 122 1 105 0 0 106 1
83 chrM 983 984 A A 250 0 23 119 105 1 0 0 106 1
84 chrM 987 988 A A 243 0 23 94 79 1 0 0 80 1
85 chrM 1005 1006 C C 138 0 18 49 1 43 0 0 44 1
86 chrM 1025 1026 G G 19 0 8 33 0 0 31 1 32 1