# HG changeset patch
# User devteam
# Date 1414698005 14400
# Node ID 64f5401327e8e0de4b14d4ebc169cddabeb23a1b
# Parent  8d65bbc52dfead4b98cf30ce64365885868604e1
Uploaded tool definition that does not fail on stderr output.

diff -r 8d65bbc52dfe -r 64f5401327e8 quality_filter.xml
--- a/quality_filter.xml	Tue Apr 01 10:52:42 2014 -0400
+++ b/quality_filter.xml	Thu Oct 30 15:40:05 2014 -0400
@@ -22,6 +22,9 @@
 	#end if
   	${GALAXY_DATA_INDEX_DIR}/quality_scores.loc
   </command>
+  <stdio>
+    <exit_code range="1:" level="fatal" description="Error" />
+  </stdio>
   <inputs>
     <param format="maf" name="input" type="data" label="Select data"/>
     <param name="primary_species" type="select" label="Use quality scores of" display="checkboxes" multiple="true">