Mercurial > repos > devteam > quality_filter

changeset 2:6c6f15373f96 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded tool definition that handles error cases in a less pragmatic way.
author devteam
date Mon, 03 Nov 2014 17:29:20 -0500
parents 64f5401327e8
children 2f4393f9f912
files quality_filter.py quality_filter.xml
diffstat 2 files changed, 0 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/quality_filter.py	Thu Oct 30 15:40:05 2014 -0400
+++ b/quality_filter.py	Mon Nov 03 17:29:20 2014 -0500
@@ -20,7 +20,6 @@
 from bx.bitset import *
 from bx.bitset_builders import *
 from bx.cookbook import doc_optparse
-from galaxy.tools.exception_handling import *
 import bx.align.maf
 
 class FileBinnedArrayDir( DictMixin ):
--- a/quality_filter.xml	Thu Oct 30 15:40:05 2014 -0400
+++ b/quality_filter.xml	Mon Nov 03 17:29:20 2014 -0500
@@ -22,9 +22,6 @@
 	#end if
   	${GALAXY_DATA_INDEX_DIR}/quality_scores.loc
   </command>
-  <stdio>
-    <exit_code range="1:" level="fatal" description="Error" />
-  </stdio>
   <inputs>
     <param format="maf" name="input" type="data" label="Select data"/>
     <param name="primary_species" type="select" label="Use quality scores of" display="checkboxes" multiple="true">