Mercurial > repos > devteam > rmap
diff tool-data/faseq.loc.sample @ 0:ee49255302d8 draft
Imported from capsule None
| author | devteam |
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| date | Mon, 19 May 2014 12:33:09 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/faseq.loc.sample Mon May 19 12:33:09 2014 -0400 @@ -0,0 +1,26 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use genome fasta sequence files. The faseq.loc file has this format +#(white space characters are TAB characters): +# +# <GenomeBuild> <dir> +# +# In the dir, each file is fasta format and contains only one sequence. So, +#for example, if you had hg18 fasta sequences stored in /depot/data2/galaxy/faseq/hg18, +#then your faseq.loc entry would look like this: +# +#hg18 /depot/data2/galaxy/faseq/hg18 +# +#and your /depot/data2/galaxy/faseq/hg18 directory would contain all of +#your fasta sequence files (e.g.): +# +#-rw-r--r-- 1 wychung galaxy 138082251 2008-04-16 11:57 chr10.fa +#-rw-r--r-- 1 wychung galaxy 115564 2008-04-16 11:57 chr10_random.fa +#-rw-r--r-- 1 wychung galaxy 137141451 2008-04-16 11:58 chr11.fa +#...etc... +#Your faseq.loc file should include an entry per line for each set of fasta +#sequence files you have stored. For example: +# +#hg18 /depot/data2/galaxy/faseq/hg18 +#mm9 /depot/data2/galaxy/faseq/mm9 +#Arabidopsis /depot/data2/galaxy/faseq/Arabidopsis +#...etc...