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comparison tool-data/faseq.loc.sample @ 0:f6e5bb5aa2f5 draft

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author devteam
date Mon, 19 May 2014 12:34:22 -0400
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1 #This is a sample file distributed with Galaxy that enables tools
2 #to use genome fasta sequence files. The faseq.loc file has this format
3 #(white space characters are TAB characters):
4 #
5 # <GenomeBuild> <dir>
6 #
7 # In the dir, each file is fasta format and contains only one sequence. So,
8 #for example, if you had hg18 fasta sequences stored in /depot/data2/galaxy/faseq/hg18,
9 #then your faseq.loc entry would look like this:
10 #
11 #hg18 /depot/data2/galaxy/faseq/hg18
12 #
13 #and your /depot/data2/galaxy/faseq/hg18 directory would contain all of
14 #your fasta sequence files (e.g.):
15 #
16 #-rw-r--r-- 1 wychung galaxy 138082251 2008-04-16 11:57 chr10.fa
17 #-rw-r--r-- 1 wychung galaxy 115564 2008-04-16 11:57 chr10_random.fa
18 #-rw-r--r-- 1 wychung galaxy 137141451 2008-04-16 11:58 chr11.fa
19 #...etc...
20 #Your faseq.loc file should include an entry per line for each set of fasta
21 #sequence files you have stored. For example:
22 #
23 #hg18 /depot/data2/galaxy/faseq/hg18
24 #mm9 /depot/data2/galaxy/faseq/mm9
25 #Arabidopsis /depot/data2/galaxy/faseq/Arabidopsis
26 #...etc...