comparison sam2interval.xml @ 1:75557c0908a9 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/sam2interval commit 206cd8245e7619b0e924c5066d0172129222993d"
author devteam
date Wed, 05 Feb 2020 06:58:53 -0500
parents 8c737b8ddc45
children
comparison
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0:8c737b8ddc45 1:75557c0908a9
1 <tool id="sam2interval" name="Convert SAM" version="1.0.1"> 1 <tool id="sam2interval" name="Convert SAM" version="1.0.2" profile="16.04">
2 <description>to interval</description> 2 <description>to interval</description>
3 <command interpreter="python">sam2interval.py --input_sam_file=$input1 $print_all > $out_file1 3 <requirements>
4 <requirement type="package" version="3.7">python</requirement>
5 </requirements>
6 <command>
7 python '$__tool_directory__/sam2interval.py' --input_sam_file='$input1' $print_all > '$out_file1'
4 </command> 8 </command>
5 <inputs> 9 <inputs>
6 <param format="sam" name="input1" type="data" label="Select dataset to convert"/> 10 <param format="sam" name="input1" type="data" label="Select dataset to convert"/>
7 <param name="print_all" type="select" label="Print all?" help="Do you want to retain original SAM fields? See example below."> 11 <param name="print_all" type="select" label="Print all?" help="Do you want to retain original SAM fields? See example below.">
8 <option value="-p">Yes</option> 12 <option value="-p">Yes</option>