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comparison sam_pileup.xml @ 2:3ff8935743a9 draft

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Remove unused flags from tool wrapper XML.
author devteam
date Thu, 09 Jan 2014 14:22:45 -0500
parents e7d863c5c5d6
children a3b4ad6858ff
comparison
equal deleted inserted replaced
1:e7d863c5c5d6 2:3ff8935743a9
11 #if $refOrHistory.reference == "history": 11 #if $refOrHistory.reference == "history":
12 --ownFile=$refOrHistory.ownFile 12 --ownFile=$refOrHistory.ownFile
13 #else: 13 #else:
14 --index=${refOrHistory.index.fields.path} 14 --index=${refOrHistory.index.fields.path}
15 #end if 15 #end if
16 --dbkey=${input1.metadata.dbkey}
17 --indexDir=${GALAXY_DATA_INDEX_DIR}
18 --bamIndex=${input1.metadata.bam_index} 16 --bamIndex=${input1.metadata.bam_index}
19 --lastCol=$lastCol 17 --lastCol=$lastCol
20 --indels=$indels 18 --indels=$indels
21 --mapCap=$mapCap 19 --mapCap=$mapCap
22 --consensus=$c.consensus 20 --consensus=$c.consensus