Mercurial > repos > devteam > sam_to_bam

changeset 5:c73bf16b45df draft

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Uploaded
author devteam
date Thu, 05 Mar 2015 21:28:25 -0500
parents 8176b2575aa1
children d04d9f1c6791
files sam_to_bam.xml tool_dependencies.xml
diffstat 2 files changed, 4 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/sam_to_bam.xml	Thu Mar 27 15:23:15 2014 -0400
+++ b/sam_to_bam.xml	Thu Mar 05 21:28:25 2015 -0500
@@ -92,11 +92,8 @@
 
 .. _SAMTools: http://samtools.sourceforge.net/samtools.shtml
 
-------
-
-**Citation**
-
-For the underlying tool, please cite `Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics. 2009 Aug 15;25(16):2078-9. <http://www.ncbi.nlm.nih.gov/pubmed/19505943>`_
-
   </help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/btp352</citation>
+    </citations>
 </tool>
--- a/tool_dependencies.xml	Thu Mar 27 15:23:15 2014 -0400
+++ b/tool_dependencies.xml	Thu Mar 05 21:28:25 2015 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="1ef76f8d8e52" name="package_samtools_0_1_19" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="95d2c4aefb5f" name="package_samtools_0_1_19" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>