Mercurial > repos > devteam > samtool_filter2
comparison samtool_filter2.xml @ 6:dc6ff68ea5e8 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/samtool_filter2 commit a97efd3ee05c6e27ff8294f66ea975445966d9c4
| author | devteam |
|---|---|
| date | Thu, 05 Oct 2017 10:31:42 -0400 |
| parents | b7aa423007bf |
| children | 56c31114ad4a |
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| 5:b7aa423007bf | 6:dc6ff68ea5e8 |
|---|---|
| 57 #if $bed_file | 57 #if $bed_file |
| 58 -L '$bed_file' | 58 -L '$bed_file' |
| 59 #end if | 59 #end if |
| 60 $input | 60 $input |
| 61 #if str($regions).strip() and $input1.is_of_type('bam') | 61 #if str($regions).strip() and $input1.is_of_type('bam') |
| 62 '$regions' | 62 #for region in str($regions).split(): |
| 63 '$region' | |
| 64 #end for | |
| 63 #end if | 65 #end if |
| 64 ## need to redirect stderr message so galaxy does not think this failed | 66 ## need to redirect stderr message so galaxy does not think this failed |
| 65 2>&1 | 67 2>&1 |
| 66 ]]> | 68 ]]> |
| 67 </command> | 69 </command> |