Mercurial > repos > devteam > samtools_flagstat

comparison test-data/samtools_flagstat_out1.txt @ 2:0072bf593791 draft

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Uploaded
author devteam
date Tue, 21 Apr 2015 15:56:53 -0400
parents 13c4ad597626
children cc61ade70eb8
comparison
equal deleted inserted replaced
1:a3dd61e7bec1 2:0072bf593791
1 10 + 0 in total (QC-passed reads + QC-failed reads) 1 200 + 0 in total (QC-passed reads + QC-failed reads)
2 0 + 0 secondary
3 0 + 0 supplementary
2 0 + 0 duplicates 4 0 + 0 duplicates
3 10 + 0 mapped (100.00%:nan%) 5 25 + 0 mapped (12.50%:nan%)
4 0 + 0 paired in sequencing 6 200 + 0 paired in sequencing
5 0 + 0 read1 7 100 + 0 read1
6 0 + 0 read2 8 100 + 0 read2
7 0 + 0 properly paired (nan%:nan%) 9 0 + 0 properly paired (0.00%:nan%)
8 0 + 0 with itself and mate mapped 10 0 + 0 with itself and mate mapped
9 0 + 0 singletons (nan%:nan%) 11 25 + 0 singletons (12.50%:nan%)
10 0 + 0 with mate mapped to a different chr 12 0 + 0 with mate mapped to a different chr
11 0 + 0 with mate mapped to a different chr (mapQ>=5) 13 0 + 0 with mate mapped to a different chr (mapQ>=5)