Mercurial > repos > devteam > samtools_flagstat
comparison samtools_flagstat.xml @ 5:db17d5321bad draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author | iuc |
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date | Mon, 29 Jul 2019 08:48:13 -0400 |
parents | 4e404acfafa6 |
children | 22970df7a40e |
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4:4e404acfafa6 | 5:db17d5321bad |
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7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <expand macro="stdio"/> | 8 <expand macro="stdio"/> |
9 <expand macro="version_command"/> | 9 <expand macro="version_command"/> |
10 | 10 |
11 <command><![CDATA[ | 11 <command><![CDATA[ |
12 samtools flagstat '$input1' > '$output1' | 12 @ADDTHREADS@ |
13 samtools flagstat -@ \$addthreads '$input1' > '$output1' | |
13 ]]></command> | 14 ]]></command> |
14 | 15 |
15 <inputs> | 16 <inputs> |
16 <param name="input1" type="data" format="sam,bam,cram" label="BAM File to report statistics of" /> | 17 <param name="input1" type="data" format="sam,bam,cram" label="BAM File to report statistics of" /> |
17 </inputs> | 18 </inputs> |