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comparison samtools_flagstat.xml @ 5:db17d5321bad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author iuc
date Mon, 29 Jul 2019 08:48:13 -0400
parents 4e404acfafa6
children 22970df7a40e
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4:4e404acfafa6 5:db17d5321bad
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <expand macro="version_command"/> 9 <expand macro="version_command"/>
10 10
11 <command><![CDATA[ 11 <command><![CDATA[
12 samtools flagstat '$input1' > '$output1' 12 @ADDTHREADS@
13 samtools flagstat -@ \$addthreads '$input1' > '$output1'
13 ]]></command> 14 ]]></command>
14 15
15 <inputs> 16 <inputs>
16 <param name="input1" type="data" format="sam,bam,cram" label="BAM File to report statistics of" /> 17 <param name="input1" type="data" format="sam,bam,cram" label="BAM File to report statistics of" />
17 </inputs> 18 </inputs>