Mercurial > repos > devteam > samtools_flagstat
view test-data/samtools_flagstat_out1.txt @ 8:fefd89ab563c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_flagstat commit cd62639660bef041ba14ecff337fb98e84e75d8a
| author | iuc |
|---|---|
| date | Mon, 20 Nov 2023 22:15:35 +0000 |
| parents | fe34990e5ce7 |
| children |
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200 + 0 in total (QC-passed reads + QC-failed reads) 200 + 0 primary 0 + 0 secondary 0 + 0 supplementary 0 + 0 duplicates 0 + 0 primary duplicates 25 + 0 mapped (12.50% : N/A) 25 + 0 primary mapped (12.50% : N/A) 200 + 0 paired in sequencing 100 + 0 read1 100 + 0 read2 0 + 0 properly paired (0.00% : N/A) 0 + 0 with itself and mate mapped 25 + 0 singletons (12.50% : N/A) 0 + 0 with mate mapped to a different chr 0 + 0 with mate mapped to a different chr (mapQ>=5)