Mercurial > repos > devteam > samtools_phase

comparison test-data/samtools_phase_out_1_log.txt @ 0:cba1944e3ed0 draft

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Uploaded tool and dependency definition.
author devteam
date Thu, 27 Mar 2014 15:26:17 -0400
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children 8bfe0d1616d2
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-1:000000000000 0:cba1944e3ed0
1 CC
2 CC Descriptions:
3 CC
4 CC CC comments
5 CC PS start of a phase set
6 CC FL filtered region
7 CC M[012] markers; 0 for singletons, 1 for phased and 2 for filtered
8 CC EV supporting reads; SAM format
9 CC // end of a phase set
10 CC
11 CC Formats of PS, FL and M[012] lines (1-based coordinates):
12 CC
13 CC PS chr phaseSetStart phaseSetEnd
14 CC FL chr filterStart filterEnd
15 CC M? chr PS pos allele0 allele1 hetIndex #supports0 #errors0 #supp1 #err1
16 CC
17 CC
18 PS chrI 1187 1290
19 M1 chrI 1187 1187 T A 1 2 0 4 0
20 M1 chrI 1187 1216 T A 2 3 0 4 0
21 M1 chrI 1187 1222 C A 3 3 0 3 1
22 M1 chrI 1187 1290 A T 4 1 0 0 0
23 EV 0 chrI 1 40 3M * 0 0 AAC * YP:i:1 YF:i:0 YI:i:2 YO:i:1 YS:i:1164
24 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1141
25 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1147
26 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1176
27 EV 0 chrI 1 40 3M * 0 0 TTC * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1157
28 EV 0 chrI 1 40 3M * 0 0 AAA * YP:i:1 YF:i:0 YI:i:3 YO:i:0 YS:i:1145
29 EV 0 chrI 2 40 3M * 0 0 TCA * YP:i:0 YF:i:0 YI:i:3 YO:i:0 YS:i:1215
30 //