Mercurial > repos > devteam > samtools_rmdup
comparison samtools_rmdup.xml @ 3:bb40e4252392 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/samtools/samtools_rmdup commit b9c475e401d953823899cb67833ebef2a566b427
author | devteam |
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date | Tue, 01 Dec 2015 16:12:16 -0500 |
parents | 3735f950b2f5 |
children | 9129584416e2 |
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2:3735f950b2f5 | 3:bb40e4252392 |
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1 <tool id="samtools_rmdup" name="RmDup" version="2.0"> | 1 <tool id="samtools_rmdup" name="RmDup" version="2.0"> |
2 <description>remove PCR duplicates</description> | 2 <description>remove PCR duplicates</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"></expand> | 6 <requirements> |
7 <requirement type="package" version="0.1.19">samtools</requirement> | |
8 </requirements> | |
7 <expand macro="stdio"></expand> | 9 <expand macro="stdio"></expand> |
8 <expand macro="version_command"></expand> | 10 <expand macro="version_command"></expand> |
9 <command>samtools rmdup | 11 <command>samtools rmdup |
10 #if str( $bam_paired_end_type.bam_paired_end_type_selector ) == "PE" | 12 #if str( $bam_paired_end_type.bam_paired_end_type_selector ) == "PE" |
11 ${bam_paired_end_type.force_se} | 13 ${bam_paired_end_type.force_se} |