Mercurial > repos > devteam > samtools_slice_bam

diff samtools_slice_bam.xml @ 7:fea1a167b822 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_slice_bam commit c508c3af0f4121dcc38e0be63db00a604e997b8a
author iuc
date Thu, 19 Jun 2025 13:01:04 +0000
parents b5c88b7b153e
children adc4ed59d82b
line wrap: on
line diff
--- a/samtools_slice_bam.xml	Sun Sep 08 03:26:35 2024 +0000
+++ b/samtools_slice_bam.xml	Thu Jun 19 13:01:04 2025 +0000
@@ -1,4 +1,4 @@
-<tool id="samtools_slice_bam" name="Slice" version="2.0.3" profile="@PROFILE@">
+<tool id="samtools_slice_bam" name="Slice" version="2.0.4" profile="@PROFILE@">
     <description>BAM by genomic regions</description>
     <macros>
         <import>macros.xml</import>
@@ -81,22 +81,30 @@
     <tests>
         <test>
             <param name="input_bam" ftype="bam" value="bam-slice-input.bam" />
-            <param name="slice_method_selector" value="bed"/>
-            <param name="input_interval" ftype="bed" value="bam-slice.bed" />
+            <conditional name="slice_method">
+                <param name="slice_method_selector" value="bed"/>
+                <param name="input_interval" ftype="bed" value="bam-slice.bed" />
+            </conditional>
             <output name="output_bam" file="bam-slice-test1.bam" ftype="bam" lines_diff="4" />
         </test>
         <test>
             <param name="input_bam" ftype="bam" value="bam-slice-input.bam" />
-            <param name="slice_method_selector" value="chr"/>
-            <param name="refs" value="chrM" />
+            <conditional name="slice_method">
+                <param name="slice_method_selector" value="chr"/>
+                <param name="refs" value="chrM" />
+            </conditional>
             <output name="output_bam" file="bam-slice-test2.bam" ftype="bam" lines_diff="4" />
         </test>
         <test>
             <param name="input_bam" ftype="bam" value="bam-slice-input.bam" />
-            <param name="slice_method_selector" value="man"/>
-            <param name="chrom" value="chrM" />
-            <param name="start" value="1" />
-            <param name="end" value="1000" />
+            <conditional name="slice_method">
+                <param name="slice_method_selector" value="man"/>
+                <repeat name="regions">
+                    <param name="chrom" value="chrM" />
+                    <param name="start" value="1" />
+                    <param name="end" value="1000" />
+                </repeat>
+            </conditional>
             <output name="output_bam" file="bam-slice-test3.bam" ftype="bam" lines_diff="4"/>
         </test>
     </tests>