Mercurial > repos > devteam > samtools_split
changeset 6:818030fa6bbf draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_split commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
| author | iuc |
|---|---|
| date | Sun, 08 Sep 2024 03:26:49 +0000 |
| parents | bd850490c7f1 |
| children | |
| files | macros.xml samtools_split.xml test-data/phiX_Elephant.bam test-data/phiX_Human.bam test-data/phiX_Mouse.bam test-data/samtools_split_out.bam |
| diffstat | 6 files changed, 6 insertions(+), 7 deletions(-) [+] |
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--- a/macros.xml Mon Nov 20 22:16:50 2023 +0000 +++ b/macros.xml Sun Sep 08 03:26:49 2024 +0000 @@ -11,9 +11,9 @@ please only bump the minor version in order to let the requirement version catch up eventually). To find the tools check: `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` --> - <token name="@TOOL_VERSION@">1.15.1</token> + <token name="@TOOL_VERSION@">1.20</token> <token name="@VERSION_SUFFIX@">2</token> - <token name="@PROFILE@">20.05</token> + <token name="@PROFILE@">22.05</token> <token name="@FLAGS@"><![CDATA[ #set $flags = 0 #if $filter
--- a/samtools_split.xml Mon Nov 20 22:16:50 2023 +0000 +++ b/samtools_split.xml Sun Sep 08 03:26:49 2024 +0000 @@ -8,12 +8,11 @@ <expand macro="version_command"/> <command><![CDATA[ @ADDTHREADS@ - samtools split -f 'Read_Group_%!.bam' + samtools split -f 'Read_Group_%!.bam' --output-fmt 'bam' #if $header: - -u '${output}:${header}' - #else: - -u '${output}' + -h $header' #end if + -u '$output' -@ \$addthreads '$input_bam' ]]></command> @@ -41,7 +40,7 @@ Splits BAM files on readgroups. -This tool is based on ``samtools split`` command. It will generate multiple output datasets for each redagroup from the input dataset. +This tool is based on ``samtools split`` command. It will generate multiple output datasets for each readgroup from the input dataset. ]]></help> <expand macro="citations"/> </tool>