Mercurial > repos > devteam > samtools_stats

comparison samtools_stats.xml @ 9:1cc79f49b8d5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit c5ded4208dd70e88596ddc725795a2401773f02d"
author iuc
date Sat, 27 Nov 2021 12:33:04 +0000
parents e28839a4b932
children 3a0efe14891f
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8:e28839a4b932 9:1cc79f49b8d5
40 #end if 40 #end if
41 #if str($trim_quality): 41 #if str($trim_quality):
42 --trim-quality ${trim_quality} 42 --trim-quality ${trim_quality}
43 #end if 43 #end if
44 44
45 #if $reffa != None: 45 #if $use_ref:
46 --ref-seq '$reffa' 46 --ref-seq "\$reffa"
47 #end if 47 #end if
48 ## TODO currently not implemented in Galaxy 48 ## TODO currently not implemented in Galaxy
49 ## generates STR_VALUE.bamstat where STR is given by -P and VALUE is a value of the TAG given by -S 49 ## generates STR_VALUE.bamstat where STR is given by -P and VALUE is a value of the TAG given by -S
50 ## needs some discover data sets action... 50 ## needs some discover data sets action...
51 ## -P, --split-prefix STR 51 ## -P, --split-prefix STR