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comparison test-data/samtools_stats_out2.tab @ 2:24c5d43cb545 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
author iuc
date Tue, 09 May 2017 11:19:01 -0400
parents 0d71d9467847
children
comparison
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1:8cfc17e27132 2:24c5d43cb545
1 # This file was produced by samtools stats (1.2+htslib-1.2.1) and can be plotted using plot-bamstats 1 # This file was produced by samtools stats (1.3.1+htslib-1.3.1) and can be plotted using plot-bamstats
2 # The command line was: stats --coverage 1,1000,1 --GC-depth 20000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 --ref-seq /Users/anton/galaxy-git/database/files/000/dataset_9.dat /Users/anton/galaxy-git/database/files/000/dataset_10.dat 2 # This file contains statistics for all reads.
3 # The command line was: stats --coverage 1,1000,1 --GC-depth 20000.0 --insert-size 8000 --most-inserts 0.99 --trim-quality 0 --ref-seq /tmp/tmpO1aTrb/files/000/dataset_5.dat /tmp/tmpO1aTrb/files/000/dataset_4.dat
3 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities 4 # CHK, Checksum [2]Read Names [3]Sequences [4]Qualities
4 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) 5 # CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow)
5 CHK 1bd20fd8 58ad2167 29883386 6 CHK 1bd20fd8 58ad2167 29883386
6 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. 7 # Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part.
7 SN raw total sequences: 200 8 SN raw total sequences: 200
834 GCL 51.01 6 835 GCL 51.01 6
835 GCL 51.51 4 836 GCL 51.51 4
836 GCL 52.01 1 837 GCL 52.01 1
837 GCL 52.51 0 838 GCL 52.51 0
838 GCL 53.02 1 839 GCL 53.02 1
839 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle, and A,C,G,T counts [%] 840 # ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%]
840 GCC 1 21.50 29.50 33.50 15.50 841 GCC 1 21.94 30.10 34.18 13.78 2.04 0.00
841 GCC 2 30.00 16.00 11.00 43.00 842 GCC 2 30.00 16.00 11.00 43.00 0.00 0.00
842 GCC 3 33.00 25.00 9.00 33.00 843 GCC 3 33.00 25.00 9.00 33.00 0.00 0.00
843 GCC 4 17.00 29.00 13.00 41.00 844 GCC 4 17.00 29.00 13.00 41.00 0.00 0.00
844 GCC 5 37.00 22.00 12.00 29.00 845 GCC 5 37.00 22.00 12.00 29.00 0.00 0.00
845 GCC 6 36.00 26.00 17.00 21.00 846 GCC 6 36.00 26.00 17.00 21.00 0.00 0.00
846 GCC 7 29.50 13.50 31.50 25.50 847 GCC 7 29.50 13.50 31.50 25.50 0.00 0.00
847 GCC 8 50.50 14.50 19.50 15.50 848 GCC 8 50.50 14.50 19.50 15.50 0.00 0.00
848 GCC 9 17.00 33.00 18.00 32.00 849 GCC 9 17.00 33.00 18.00 32.00 0.00 0.00
849 GCC 10 37.00 14.00 21.00 28.00 850 GCC 10 37.00 14.00 21.00 28.00 0.00 0.00
850 GCC 11 20.50 14.50 29.50 35.50 851 GCC 11 20.50 14.50 29.50 35.50 0.00 0.00
851 GCC 12 30.00 24.00 22.00 24.00 852 GCC 12 30.00 24.00 22.00 24.00 0.00 0.00
852 GCC 13 27.00 15.00 21.00 37.00 853 GCC 13 27.00 15.00 21.00 37.00 0.00 0.00
853 GCC 14 24.00 22.00 26.00 28.00 854 GCC 14 24.24 22.22 26.26 27.27 1.01 0.00
854 GCC 15 25.50 20.50 24.50 29.50 855 GCC 15 25.50 20.50 24.50 29.50 0.00 0.00
855 GCC 16 31.00 15.00 20.00 34.00 856 GCC 16 31.00 15.00 20.00 34.00 0.00 0.00
856 GCC 17 28.00 25.00 14.00 33.00 857 GCC 17 28.00 25.00 14.00 33.00 0.00 0.00
857 GCC 18 30.50 28.50 19.50 21.50 858 GCC 18 30.50 28.50 19.50 21.50 0.00 0.00
858 GCC 19 29.00 26.00 21.00 24.00 859 GCC 19 29.00 26.00 21.00 24.00 0.00 0.00
859 GCC 20 22.50 23.50 17.50 36.50 860 GCC 20 22.50 23.50 17.50 36.50 0.00 0.00
860 GCC 21 35.50 17.50 19.50 27.50 861 GCC 21 35.50 17.50 19.50 27.50 0.00 0.00
861 GCC 22 37.50 28.50 15.50 18.50 862 GCC 22 37.50 28.50 15.50 18.50 0.00 0.00
862 GCC 23 31.00 19.00 13.00 37.00 863 GCC 23 31.31 19.19 13.13 36.36 1.01 0.00
863 GCC 24 37.00 12.00 22.00 29.00 864 GCC 24 37.00 12.00 22.00 29.00 0.00 0.00
864 GCC 25 35.50 22.50 17.50 24.50 865 GCC 25 35.50 22.50 17.50 24.50 0.00 0.00
865 GCC 26 33.50 18.50 15.50 32.50 866 GCC 26 33.50 18.50 15.50 32.50 0.00 0.00
866 GCC 27 34.50 14.50 25.50 25.50 867 GCC 27 34.50 14.50 25.50 25.50 0.00 0.00
867 GCC 28 31.00 14.00 24.00 31.00 868 GCC 28 31.00 14.00 24.00 31.00 0.00 0.00
868 GCC 29 30.00 27.00 24.00 19.00 869 GCC 29 30.00 27.00 24.00 19.00 0.00 0.00
869 GCC 30 31.00 20.00 14.00 35.00 870 GCC 30 31.00 20.00 14.00 35.00 0.00 0.00
870 GCC 31 33.50 29.50 13.50 23.50 871 GCC 31 33.50 29.50 13.50 23.50 0.00 0.00
871 GCC 32 42.50 20.50 19.50 17.50 872 GCC 32 42.50 20.50 19.50 17.50 0.00 0.00
872 GCC 33 25.50 23.50 14.50 36.50 873 GCC 33 25.50 23.50 14.50 36.50 0.00 0.00
873 GCC 34 39.50 16.50 20.50 23.50 874 GCC 34 39.50 16.50 20.50 23.50 0.00 0.00
874 GCC 35 32.50 23.50 21.50 22.50 875 GCC 35 32.50 23.50 21.50 22.50 0.00 0.00
875 GCC 36 42.00 25.00 16.00 17.00 876 GCC 36 42.00 25.00 16.00 17.00 0.00 0.00
876 GCC 37 38.00 17.00 19.00 26.00 877 GCC 37 38.00 17.00 19.00 26.00 0.00 0.00
877 GCC 38 24.00 26.00 25.00 25.00 878 GCC 38 24.00 26.00 25.00 25.00 0.00 0.00
878 GCC 39 22.50 41.50 18.50 17.50 879 GCC 39 22.50 41.50 18.50 17.50 0.00 0.00
879 GCC 40 32.00 16.00 21.00 31.00 880 GCC 40 32.00 16.00 21.00 31.00 0.00 0.00
880 GCC 41 33.00 28.00 19.00 20.00 881 GCC 41 33.00 28.00 19.00 20.00 0.00 0.00
881 GCC 42 30.50 25.50 19.50 24.50 882 GCC 42 30.50 25.50 19.50 24.50 0.00 0.00
882 GCC 43 35.00 29.00 15.00 21.00 883 GCC 43 35.00 29.00 15.00 21.00 0.00 0.00
883 GCC 44 20.00 27.00 22.00 31.00 884 GCC 44 20.00 27.00 22.00 31.00 0.00 0.00
884 GCC 45 40.50 21.50 21.50 16.50 885 GCC 45 40.50 21.50 21.50 16.50 0.00 0.00
885 GCC 46 26.50 20.50 22.50 30.50 886 GCC 46 26.50 20.50 22.50 30.50 0.00 0.00
886 GCC 47 38.50 29.50 16.50 15.50 887 GCC 47 38.50 29.50 16.50 15.50 0.00 0.00
887 GCC 48 27.50 24.50 17.50 30.50 888 GCC 48 27.50 24.50 17.50 30.50 0.00 0.00
888 GCC 49 28.50 32.50 10.50 28.50 889 GCC 49 28.50 32.50 10.50 28.50 0.00 0.00
889 GCC 50 46.50 20.50 9.50 23.50 890 GCC 50 46.50 20.50 9.50 23.50 0.00 0.00
890 GCC 51 34.50 28.50 13.50 23.50 891 GCC 51 34.50 28.50 13.50 23.50 0.00 0.00
891 GCC 52 41.50 23.50 20.50 14.50 892 GCC 52 41.50 23.50 20.50 14.50 0.00 0.00
892 GCC 53 20.00 28.00 26.00 26.00 893 GCC 53 20.00 28.00 26.00 26.00 0.00 0.00
893 GCC 54 31.50 18.50 24.50 25.50 894 GCC 54 31.50 18.50 24.50 25.50 0.00 0.00
894 GCC 55 30.50 22.50 16.50 30.50 895 GCC 55 30.50 22.50 16.50 30.50 0.00 0.00
895 GCC 56 33.50 22.50 13.50 30.50 896 GCC 56 33.50 22.50 13.50 30.50 0.00 0.00
896 GCC 57 23.00 24.00 23.00 30.00 897 GCC 57 23.00 24.00 23.00 30.00 0.00 0.00
897 GCC 58 25.00 37.00 19.00 19.00 898 GCC 58 25.00 37.00 19.00 19.00 0.00 0.00
898 GCC 59 34.00 23.00 24.00 19.00 899 GCC 59 34.00 23.00 24.00 19.00 0.00 0.00
899 GCC 60 29.00 28.00 17.00 26.00 900 GCC 60 29.00 28.00 17.00 26.00 0.00 0.00
900 GCC 61 25.50 23.50 24.50 26.50 901 GCC 61 25.50 23.50 24.50 26.50 0.00 0.00
901 GCC 62 31.50 22.50 16.50 29.50 902 GCC 62 31.50 22.50 16.50 29.50 0.00 0.00
902 GCC 63 27.50 28.50 25.50 18.50 903 GCC 63 27.50 28.50 25.50 18.50 0.00 0.00
903 GCC 64 33.50 21.50 25.50 19.50 904 GCC 64 33.50 21.50 25.50 19.50 0.00 0.00
904 GCC 65 35.50 19.50 18.50 26.50 905 GCC 65 35.50 19.50 18.50 26.50 0.00 0.00
905 GCC 66 34.00 25.00 15.00 26.00 906 GCC 66 34.00 25.00 15.00 26.00 0.00 0.00
906 GCC 67 37.00 23.00 19.00 21.00 907 GCC 67 37.00 23.00 19.00 21.00 0.00 0.00
907 GCC 68 36.50 29.50 13.50 20.50 908 GCC 68 36.50 29.50 13.50 20.50 0.00 0.00
908 GCC 69 38.50 19.50 20.50 21.50 909 GCC 69 38.50 19.50 20.50 21.50 0.00 0.00
909 GCC 70 38.50 16.50 18.50 26.50 910 GCC 70 38.50 16.50 18.50 26.50 0.00 0.00
910 GCC 71 25.50 38.50 21.50 14.50 911 GCC 71 25.50 38.50 21.50 14.50 0.00 0.00
911 GCC 72 29.00 29.00 25.00 17.00 912 GCC 72 29.00 29.00 25.00 17.00 0.00 0.00
912 GCC 73 32.50 20.50 21.50 25.50 913 GCC 73 32.50 20.50 21.50 25.50 0.00 0.00
913 GCC 74 28.50 32.50 12.50 26.50 914 GCC 74 28.50 32.50 12.50 26.50 0.00 0.00
914 GCC 75 41.50 12.50 18.50 27.50 915 GCC 75 41.50 12.50 18.50 27.50 0.00 0.00
915 GCC 76 24.50 29.50 23.50 22.50 916 GCC 76 24.50 29.50 23.50 22.50 0.00 0.00
916 GCC 77 36.00 21.00 18.00 25.00 917 GCC 77 36.00 21.00 18.00 25.00 0.00 0.00
917 GCC 78 27.00 34.00 22.00 17.00 918 GCC 78 27.00 34.00 22.00 17.00 0.00 0.00
918 GCC 79 21.50 26.50 25.50 26.50 919 GCC 79 21.50 26.50 25.50 26.50 0.00 0.00
919 GCC 80 34.00 19.00 28.00 19.00 920 GCC 80 34.00 19.00 28.00 19.00 0.00 0.00
920 GCC 81 17.00 26.00 26.00 31.00 921 GCC 81 17.00 26.00 26.00 31.00 0.00 0.00
921 GCC 82 31.00 30.00 23.00 16.00 922 GCC 82 31.00 30.00 23.00 16.00 0.00 0.00
922 GCC 83 31.50 26.50 12.50 29.50 923 GCC 83 31.50 26.50 12.50 29.50 0.00 0.00
923 GCC 84 19.00 41.00 21.00 19.00 924 GCC 84 19.00 41.00 21.00 19.00 0.00 0.00
924 GCC 85 37.50 24.50 16.50 21.50 925 GCC 85 37.50 24.50 16.50 21.50 0.00 0.00
925 GCC 86 15.00 48.00 15.00 22.00 926 GCC 86 15.00 48.00 15.00 22.00 0.00 0.00
926 GCC 87 41.00 16.00 18.00 25.00 927 GCC 87 41.00 16.00 18.00 25.00 0.00 0.00
927 GCC 88 23.50 27.50 27.50 21.50 928 GCC 88 23.50 27.50 27.50 21.50 0.00 0.00
928 GCC 89 26.50 27.50 26.50 19.50 929 GCC 89 26.50 27.50 26.50 19.50 0.00 0.00
929 GCC 90 18.50 23.50 24.50 33.50 930 GCC 90 18.50 23.50 24.50 33.50 0.00 0.00
930 GCC 91 27.00 32.00 22.00 19.00 931 GCC 91 27.00 32.00 22.00 19.00 0.00 0.00
931 GCC 92 23.50 17.50 27.50 31.50 932 GCC 92 23.50 17.50 27.50 31.50 0.00 0.00
932 GCC 93 25.50 37.50 15.50 21.50 933 GCC 93 25.50 37.50 15.50 21.50 0.00 0.00
933 GCC 94 27.00 17.00 24.00 32.00 934 GCC 94 27.00 17.00 24.00 32.00 0.00 0.00
934 GCC 95 26.50 37.50 14.50 21.50 935 GCC 95 26.77 37.88 14.65 20.71 1.01 0.00
935 GCC 96 29.50 25.50 16.50 28.50 936 GCC 96 29.50 25.50 16.50 28.50 0.00 0.00
936 GCC 97 29.00 31.00 21.00 19.00 937 GCC 97 29.00 31.00 21.00 19.00 0.00 0.00
937 GCC 98 18.00 33.00 22.00 27.00 938 GCC 98 18.18 33.33 22.22 26.26 1.01 0.00
938 GCC 99 24.50 33.50 24.50 17.50 939 GCC 99 24.50 33.50 24.50 17.50 0.00 0.00
939 GCC 100 24.50 16.50 24.50 34.50 940 GCC 100 24.50 16.50 24.50 34.50 0.00 0.00
940 GCC 101 25.00 40.00 19.00 16.00 941 GCC 101 25.00 40.00 19.00 16.00 0.00 0.00
941 GCC 102 17.50 17.50 32.50 32.50 942 GCC 102 17.50 17.50 32.50 32.50 0.00 0.00
942 GCC 103 31.00 26.00 16.00 27.00 943 GCC 103 31.00 26.00 16.00 27.00 0.00 0.00
943 GCC 104 26.50 29.50 20.50 23.50 944 GCC 104 26.50 29.50 20.50 23.50 0.00 0.00
944 GCC 105 34.00 33.00 21.00 12.00 945 GCC 105 34.00 33.00 21.00 12.00 0.00 0.00
945 GCC 106 23.00 31.00 26.00 20.00 946 GCC 106 23.00 31.00 26.00 20.00 0.00 0.00
946 GCC 107 17.50 35.50 23.50 23.50 947 GCC 107 17.68 35.86 23.74 22.73 1.01 0.00
947 GCC 108 24.50 30.50 23.50 21.50 948 GCC 108 24.75 30.81 23.74 20.71 1.01 0.00
948 GCC 109 17.00 31.00 22.00 30.00 949 GCC 109 17.00 31.00 22.00 30.00 0.00 0.00
949 GCC 110 16.00 35.00 24.00 25.00 950 GCC 110 16.16 35.35 24.24 24.24 1.01 0.00
950 GCC 111 24.00 32.00 23.00 21.00 951 GCC 111 24.24 32.32 23.23 20.20 1.01 0.00
951 GCC 112 37.00 28.00 16.00 19.00 952 GCC 112 37.37 28.28 16.16 18.18 1.01 0.00
952 GCC 113 19.50 22.50 32.50 25.50 953 GCC 113 19.70 22.73 32.83 24.75 1.01 0.00
953 GCC 114 17.00 31.00 35.00 17.00 954 GCC 114 17.00 31.00 35.00 17.00 0.00 0.00
954 GCC 115 29.50 24.50 23.50 22.50 955 GCC 115 29.50 24.50 23.50 22.50 0.00 0.00
955 GCC 116 22.00 30.00 34.00 14.00 956 GCC 116 22.00 30.00 34.00 14.00 0.00 0.00
956 GCC 117 27.00 23.00 19.00 31.00 957 GCC 117 27.00 23.00 19.00 31.00 0.00 0.00
957 GCC 118 25.50 14.50 34.50 25.50 958 GCC 118 25.50 14.50 34.50 25.50 0.00 0.00
958 GCC 119 22.50 34.50 20.50 22.50 959 GCC 119 22.50 34.50 20.50 22.50 0.00 0.00
959 GCC 120 17.50 24.50 26.50 31.50 960 GCC 120 17.50 24.50 26.50 31.50 0.00 0.00
960 GCC 121 27.50 33.50 22.50 16.50 961 GCC 121 27.78 33.84 22.73 15.66 1.01 0.00
961 GCC 122 17.00 23.00 25.00 35.00 962 GCC 122 17.00 23.00 25.00 35.00 0.00 0.00
962 GCC 123 23.50 46.50 11.50 18.50 963 GCC 123 23.50 46.50 11.50 18.50 0.00 0.00
963 GCC 124 9.00 32.00 34.00 25.00 964 GCC 124 9.00 32.00 34.00 25.00 0.00 0.00
964 GCC 125 24.00 27.00 19.00 30.00 965 GCC 125 24.00 27.00 19.00 30.00 0.00 0.00
965 GCC 126 26.00 17.00 28.00 29.00 966 GCC 126 26.00 17.00 28.00 29.00 0.00 0.00
966 GCC 127 26.50 16.50 21.50 35.50 967 GCC 127 26.50 16.50 21.50 35.50 0.00 0.00
967 GCC 128 18.00 34.00 31.00 17.00 968 GCC 128 18.00 34.00 31.00 17.00 0.00 0.00
968 GCC 129 25.50 25.50 27.50 21.50 969 GCC 129 25.50 25.50 27.50 21.50 0.00 0.00
969 GCC 130 25.00 20.00 22.00 33.00 970 GCC 130 25.00 20.00 22.00 33.00 0.00 0.00
970 GCC 131 17.50 39.50 24.50 18.50 971 GCC 131 17.50 39.50 24.50 18.50 0.00 0.00
971 GCC 132 21.00 28.00 23.00 28.00 972 GCC 132 21.00 28.00 23.00 28.00 0.00 0.00
972 GCC 133 13.50 31.50 35.50 19.50 973 GCC 133 13.50 31.50 35.50 19.50 0.00 0.00
973 GCC 134 24.50 19.50 30.50 25.50 974 GCC 134 24.50 19.50 30.50 25.50 0.00 0.00
974 GCC 135 16.50 23.50 30.50 29.50 975 GCC 135 16.50 23.50 30.50 29.50 0.00 0.00
975 GCC 136 28.00 32.00 15.00 25.00 976 GCC 136 28.00 32.00 15.00 25.00 0.00 0.00
976 GCC 137 22.50 21.50 30.50 25.50 977 GCC 137 22.50 21.50 30.50 25.50 0.00 0.00
977 GCC 138 14.50 34.50 24.50 26.50 978 GCC 138 14.50 34.50 24.50 26.50 0.00 0.00
978 GCC 139 20.50 29.50 24.50 25.50 979 GCC 139 20.50 29.50 24.50 25.50 0.00 0.00
979 GCC 140 17.00 23.00 30.00 30.00 980 GCC 140 17.00 23.00 30.00 30.00 0.00 0.00
980 GCC 141 20.50 23.50 25.50 30.50 981 GCC 141 20.50 23.50 25.50 30.50 0.00 0.00
981 GCC 142 18.00 29.00 38.00 15.00 982 GCC 142 18.00 29.00 38.00 15.00 0.00 0.00
982 GCC 143 22.00 24.00 27.00 27.00 983 GCC 143 22.00 24.00 27.00 27.00 0.00 0.00
983 GCC 144 21.50 30.50 26.50 21.50 984 GCC 144 21.50 30.50 26.50 21.50 0.00 0.00
984 GCC 145 22.00 21.00 29.00 28.00 985 GCC 145 22.00 21.00 29.00 28.00 0.00 0.00
985 GCC 146 25.00 16.00 39.00 20.00 986 GCC 146 25.00 16.00 39.00 20.00 0.00 0.00
986 GCC 147 26.50 22.50 30.50 20.50 987 GCC 147 26.50 22.50 30.50 20.50 0.00 0.00
987 GCC 148 12.50 28.50 36.50 22.50 988 GCC 148 12.50 28.50 36.50 22.50 0.00 0.00
988 GCC 149 26.50 23.50 23.50 26.50 989 GCC 149 26.50 23.50 23.50 26.50 0.00 0.00
989 GCC 150 14.00 29.00 24.00 33.00 990 GCC 150 14.00 29.00 24.00 33.00 0.00 0.00
990 GCC 151 19.50 30.50 32.50 17.50 991 GCC 151 19.50 30.50 32.50 17.50 0.00 0.00
991 GCC 152 18.50 17.50 29.50 34.50 992 GCC 152 18.50 17.50 29.50 34.50 0.00 0.00
992 GCC 153 22.50 22.50 31.50 23.50 993 GCC 153 22.50 22.50 31.50 23.50 0.00 0.00
993 GCC 154 22.00 21.00 29.00 28.00 994 GCC 154 22.00 21.00 29.00 28.00 0.00 0.00
994 GCC 155 21.00 26.00 19.00 34.00 995 GCC 155 21.00 26.00 19.00 34.00 0.00 0.00
995 GCC 156 14.50 23.50 35.50 26.50 996 GCC 156 14.50 23.50 35.50 26.50 0.00 0.00
996 GCC 157 22.00 31.00 23.00 24.00 997 GCC 157 22.00 31.00 23.00 24.00 0.00 0.00
997 GCC 158 22.50 29.50 24.50 23.50 998 GCC 158 22.50 29.50 24.50 23.50 0.00 0.00
998 GCC 159 17.50 12.50 46.50 23.50 999 GCC 159 17.50 12.50 46.50 23.50 0.00 0.00
999 GCC 160 24.50 26.50 26.50 22.50 1000 GCC 160 24.50 26.50 26.50 22.50 0.00 0.00
1000 GCC 161 13.00 23.00 45.00 19.00 1001 GCC 161 13.00 23.00 45.00 19.00 0.00 0.00
1001 GCC 162 31.50 16.50 22.50 29.50 1002 GCC 162 31.50 16.50 22.50 29.50 0.00 0.00
1002 GCC 163 19.50 21.50 35.50 23.50 1003 GCC 163 19.50 21.50 35.50 23.50 0.00 0.00
1003 GCC 164 29.00 18.00 21.00 32.00 1004 GCC 164 29.00 18.00 21.00 32.00 0.00 0.00
1004 GCC 165 14.50 17.50 35.50 32.50 1005 GCC 165 14.50 17.50 35.50 32.50 0.00 0.00
1005 GCC 166 17.50 37.50 28.50 16.50 1006 GCC 166 17.50 37.50 28.50 16.50 0.00 0.00
1006 GCC 167 16.50 21.50 31.50 30.50 1007 GCC 167 16.50 21.50 31.50 30.50 0.00 0.00
1007 GCC 168 14.00 25.00 30.00 31.00 1008 GCC 168 14.00 25.00 30.00 31.00 0.00 0.00
1008 GCC 169 18.50 20.50 23.50 37.50 1009 GCC 169 18.50 20.50 23.50 37.50 0.00 0.00
1009 GCC 170 19.00 23.00 28.00 30.00 1010 GCC 170 19.00 23.00 28.00 30.00 0.00 0.00
1010 GCC 171 20.00 28.00 33.00 19.00 1011 GCC 171 20.00 28.00 33.00 19.00 0.00 0.00
1011 GCC 172 19.00 20.00 32.00 29.00 1012 GCC 172 19.00 20.00 32.00 29.00 0.00 0.00
1012 GCC 173 24.50 16.50 33.50 25.50 1013 GCC 173 24.50 16.50 33.50 25.50 0.00 0.00
1013 GCC 174 17.50 23.50 33.50 25.50 1014 GCC 174 17.50 23.50 33.50 25.50 0.00 0.00
1014 GCC 175 33.50 17.50 35.50 13.50 1015 GCC 175 33.50 17.50 35.50 13.50 0.00 0.00
1015 GCC 176 16.50 32.50 28.50 22.50 1016 GCC 176 16.50 32.50 28.50 22.50 0.00 0.00
1016 GCC 177 19.00 22.00 27.00 32.00 1017 GCC 177 19.00 22.00 27.00 32.00 0.00 0.00
1017 GCC 178 16.00 26.00 30.00 28.00 1018 GCC 178 16.00 26.00 30.00 28.00 0.00 0.00
1018 GCC 179 18.00 18.00 22.00 42.00 1019 GCC 179 18.00 18.00 22.00 42.00 0.00 0.00
1019 GCC 180 21.00 22.00 34.00 23.00 1020 GCC 180 21.00 22.00 34.00 23.00 0.00 0.00
1020 GCC 181 20.50 19.50 35.50 24.50 1021 GCC 181 20.50 19.50 35.50 24.50 0.00 0.00
1021 GCC 182 32.50 18.50 22.50 26.50 1022 GCC 182 32.50 18.50 22.50 26.50 0.00 0.00
1022 GCC 183 24.50 13.50 28.50 33.50 1023 GCC 183 24.50 13.50 28.50 33.50 0.00 0.00
1023 GCC 184 15.00 29.00 30.00 26.00 1024 GCC 184 15.00 29.00 30.00 26.00 0.00 0.00
1024 GCC 185 15.00 32.00 33.00 20.00 1025 GCC 185 15.00 32.00 33.00 20.00 0.00 0.00
1025 GCC 186 22.50 23.50 34.50 19.50 1026 GCC 186 22.50 23.50 34.50 19.50 0.00 0.00
1026 GCC 187 19.00 14.00 40.00 27.00 1027 GCC 187 19.00 14.00 40.00 27.00 0.00 0.00
1027 GCC 188 27.50 21.50 27.50 23.50 1028 GCC 188 27.50 21.50 27.50 23.50 0.00 0.00
1028 GCC 189 17.00 22.00 34.00 27.00 1029 GCC 189 17.00 22.00 34.00 27.00 0.00 0.00
1029 GCC 190 23.00 30.00 23.00 24.00 1030 GCC 190 23.00 30.00 23.00 24.00 0.00 0.00
1030 GCC 191 25.00 22.00 28.00 25.00 1031 GCC 191 25.00 22.00 28.00 25.00 0.00 0.00
1031 GCC 192 34.50 24.50 13.50 27.50 1032 GCC 192 34.50 24.50 13.50 27.50 0.00 0.00
1032 GCC 193 18.50 25.50 25.50 30.50 1033 GCC 193 18.50 25.50 25.50 30.50 0.00 0.00
1033 GCC 194 18.50 33.50 24.50 23.50 1034 GCC 194 18.50 33.50 24.50 23.50 0.00 0.00
1034 GCC 195 16.00 26.00 23.00 35.00 1035 GCC 195 16.00 26.00 23.00 35.00 0.00 0.00
1035 GCC 196 21.50 25.50 24.50 28.50 1036 GCC 196 21.50 25.50 24.50 28.50 0.00 0.00
1036 GCC 197 20.00 21.00 23.00 36.00 1037 GCC 197 20.00 21.00 23.00 36.00 0.00 0.00
1037 GCC 198 17.00 21.00 37.00 25.00 1038 GCC 198 17.00 21.00 37.00 25.00 0.00 0.00
1038 GCC 199 20.50 18.50 25.50 35.50 1039 GCC 199 20.50 18.50 25.50 35.50 0.00 0.00
1039 GCC 200 21.00 29.00 21.00 29.00 1040 GCC 200 21.00 29.00 21.00 29.00 0.00 0.00
1040 GCC 201 27.00 21.00 23.00 29.00 1041 GCC 201 27.00 21.00 23.00 29.00 0.00 0.00
1041 GCC 202 21.50 24.50 19.50 34.50 1042 GCC 202 21.50 24.50 19.50 34.50 0.00 0.00
1042 GCC 203 21.50 24.50 26.50 27.50 1043 GCC 203 21.50 24.50 26.50 27.50 0.00 0.00
1043 GCC 204 27.00 29.00 24.00 20.00 1044 GCC 204 27.00 29.00 24.00 20.00 0.00 0.00
1044 GCC 205 19.50 21.50 22.50 36.50 1045 GCC 205 19.50 21.50 22.50 36.50 0.00 0.00
1045 GCC 206 26.50 24.50 21.50 27.50 1046 GCC 206 26.50 24.50 21.50 27.50 0.00 0.00
1046 GCC 207 22.50 21.50 19.50 36.50 1047 GCC 207 22.50 21.50 19.50 36.50 0.00 0.00
1047 GCC 208 14.00 35.00 29.00 22.00 1048 GCC 208 14.00 35.00 29.00 22.00 0.00 0.00
1048 GCC 209 16.00 23.00 12.00 49.00 1049 GCC 209 16.00 23.00 12.00 49.00 0.00 0.00
1049 GCC 210 18.50 19.50 40.50 21.50 1050 GCC 210 18.50 19.50 40.50 21.50 0.00 0.00
1050 GCC 211 26.00 20.00 22.00 32.00 1051 GCC 211 26.00 20.00 22.00 32.00 0.00 0.00
1051 GCC 212 21.00 31.00 18.00 30.00 1052 GCC 212 21.00 31.00 18.00 30.00 0.00 0.00
1052 GCC 213 24.00 15.00 31.00 30.00 1053 GCC 213 24.00 15.00 31.00 30.00 0.00 0.00
1053 GCC 214 17.50 24.50 25.50 32.50 1054 GCC 214 17.50 24.50 25.50 32.50 0.00 0.00
1054 GCC 215 26.00 24.00 23.00 27.00 1055 GCC 215 26.00 24.00 23.00 27.00 0.00 0.00
1055 GCC 216 21.50 17.50 25.50 35.50 1056 GCC 216 21.50 17.50 25.50 35.50 0.00 0.00
1056 GCC 217 26.00 29.00 17.00 28.00 1057 GCC 217 26.00 29.00 17.00 28.00 0.00 0.00
1057 GCC 218 20.00 27.00 21.00 32.00 1058 GCC 218 20.00 27.00 21.00 32.00 0.00 0.00
1058 GCC 219 17.00 21.00 21.00 41.00 1059 GCC 219 17.00 21.00 21.00 41.00 0.00 0.00
1059 GCC 220 25.50 23.50 23.50 27.50 1060 GCC 220 25.50 23.50 23.50 27.50 0.00 0.00
1060 GCC 221 21.50 23.50 20.50 34.50 1061 GCC 221 21.50 23.50 20.50 34.50 0.00 0.00
1061 GCC 222 21.50 21.50 18.50 38.50 1062 GCC 222 21.50 21.50 18.50 38.50 0.00 0.00
1062 GCC 223 20.00 27.00 28.00 25.00 1063 GCC 223 20.00 27.00 28.00 25.00 0.00 0.00
1063 GCC 224 22.50 22.50 24.50 30.50 1064 GCC 224 22.50 22.50 24.50 30.50 0.00 0.00
1064 GCC 225 14.50 35.50 30.50 19.50 1065 GCC 225 14.50 35.50 30.50 19.50 0.00 0.00
1065 GCC 226 20.00 23.00 26.00 31.00 1066 GCC 226 20.00 23.00 26.00 31.00 0.00 0.00
1066 GCC 227 20.50 24.50 23.50 31.50 1067 GCC 227 20.50 24.50 23.50 31.50 0.00 0.00
1067 GCC 228 33.00 19.00 26.00 22.00 1068 GCC 228 33.00 19.00 26.00 22.00 0.00 0.00
1068 GCC 229 22.50 24.50 18.50 34.50 1069 GCC 229 22.50 24.50 18.50 34.50 0.00 0.00
1069 GCC 230 21.00 32.00 16.00 31.00 1070 GCC 230 21.00 32.00 16.00 31.00 0.00 0.00
1070 GCC 231 23.00 28.00 30.00 19.00 1071 GCC 231 23.00 28.00 30.00 19.00 0.00 0.00
1071 GCC 232 23.50 21.50 12.50 42.50 1072 GCC 232 23.50 21.50 12.50 42.50 0.00 0.00
1072 GCC 233 21.00 27.00 25.00 27.00 1073 GCC 233 21.00 27.00 25.00 27.00 0.00 0.00
1073 GCC 234 16.50 27.50 22.50 33.50 1074 GCC 234 16.50 27.50 22.50 33.50 0.00 0.00
1074 GCC 235 20.00 15.00 28.00 37.00 1075 GCC 235 20.00 15.00 28.00 37.00 0.00 0.00
1075 GCC 236 28.00 23.00 21.00 28.00 1076 GCC 236 28.00 23.00 21.00 28.00 0.00 0.00
1076 GCC 237 20.50 19.50 22.50 37.50 1077 GCC 237 20.50 19.50 22.50 37.50 0.00 0.00
1077 GCC 238 21.50 29.50 24.50 24.50 1078 GCC 238 21.50 29.50 24.50 24.50 0.00 0.00
1078 GCC 239 20.00 8.00 17.00 55.00 1079 GCC 239 20.00 8.00 17.00 55.00 0.00 0.00
1079 GCC 240 28.00 24.00 16.00 32.00 1080 GCC 240 28.00 24.00 16.00 32.00 0.00 0.00
1080 GCC 241 22.50 22.50 16.50 38.50 1081 GCC 241 22.50 22.50 16.50 38.50 0.00 0.00
1081 GCC 242 29.00 25.00 13.00 33.00 1082 GCC 242 29.00 25.00 13.00 33.00 0.00 0.00
1082 GCC 243 22.50 15.50 23.50 38.50 1083 GCC 243 22.50 15.50 23.50 38.50 0.00 0.00
1083 GCC 244 20.50 23.50 16.50 39.50 1084 GCC 244 20.50 23.50 16.50 39.50 0.00 0.00
1084 GCC 245 28.00 23.00 19.00 30.00 1085 GCC 245 28.00 23.00 19.00 30.00 0.00 0.00
1085 GCC 246 21.00 29.00 25.00 25.00 1086 GCC 246 21.00 29.00 25.00 25.00 0.00 0.00
1086 GCC 247 32.00 14.00 13.00 41.00 1087 GCC 247 32.00 14.00 13.00 41.00 0.00 0.00
1087 GCC 248 18.00 18.00 25.00 39.00 1088 GCC 248 18.00 18.00 25.00 39.00 0.00 0.00
1088 GCC 249 25.00 23.00 21.00 31.00 1089 GCC 249 25.00 23.00 21.00 31.00 0.00 0.00
1089 GCC 250 27.50 22.50 17.50 32.50 1090 GCC 250 27.50 22.50 17.50 32.50 0.00 0.00
1090 GCC 251 13.50 20.50 36.50 29.50 1091 GCC 251 13.50 20.50 36.50 29.50 0.00 0.00
1091 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs 1092 # Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs
1092 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count 1093 # Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count
1093 RL 251 200 1094 RL 251 200
1094 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions 1095 # Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions
1095 ID 1 1 0 1096 ID 1 1 0