diff test-data/samtools_stats_out2__sn.tab @ 2:24c5d43cb545 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit 411130b45dc30f7f24f41cdeec5e148c5d8faf40
author iuc
date Tue, 09 May 2017 11:19:01 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_stats_out2__sn.tab	Tue May 09 11:19:01 2017 -0400
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+# Summary Numbers
+
+raw total sequences:	200
+filtered sequences:	0
+sequences:	200
+is sorted:	1
+1st fragments:	100
+last fragments:	100
+reads mapped:	25
+reads mapped and paired:	0	# paired-end technology bit set + both mates mapped
+reads unmapped:	175
+reads properly paired:	0	# proper-pair bit set
+reads paired:	200	# paired-end technology bit set
+reads duplicated:	0	# PCR or optical duplicate bit set
+reads MQ0:	6	# mapped and MQ=0
+reads QC failed:	0
+non-primary alignments:	0
+total length:	50200	# ignores clipping
+bases mapped:	6275	# ignores clipping
+bases mapped (cigar):	6275	# more accurate
+bases trimmed:	0
+bases duplicated:	0
+mismatches:	591	# from NM fields
+error rate:	9.418327e-02	# mismatches / bases mapped (cigar)
+average length:	251
+maximum length:	251
+average quality:	34.7
+insert size average:	0.0
+insert size standard deviation:	0.0
+inward oriented pairs:	0
+outward oriented pairs:	0
+pairs with other orientation:	0
+pairs on different chromosomes:	0