Mercurial > repos > devteam > samtools_stats

diff samtools_stats.xml @ 5:5a08c09b9311 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit ca0d1d44099fd21e0f8214102f4d8a2fd2d054d6
author iuc
date Mon, 29 Jul 2019 08:49:54 -0400
parents 793ad847121d
children 47035d167365
line wrap: on
line diff
--- a/samtools_stats.xml	Fri Jan 04 17:04:09 2019 -0500
+++ b/samtools_stats.xml	Mon Jul 29 08:49:54 2019 -0400
@@ -10,6 +10,7 @@
     <expand macro="stdio"/>
     <expand macro="version_command"/>
     <command><![CDATA[
+        @ADDTHREADS@
         @PREPARE_IDX@
         @PREPARE_FASTA_IDX@
         samtools stats
@@ -65,6 +66,7 @@
             #if str($cov_threshold):
                 -g $cov_threshold
             #end if
+            -@ \$addthreads 
             infile
             @REGIONS_MANUAL@
             > '$output'