Mercurial > repos > devteam > samtools_stats
diff samtools_stats.xml @ 13:e221fe58c2f5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_stats commit c508c3af0f4121dcc38e0be63db00a604e997b8a
| author | iuc |
|---|---|
| date | Thu, 19 Jun 2025 13:01:32 +0000 |
| parents | fed4aa48ba09 |
| children | 1ed8ed887035 |
line wrap: on
line diff
--- a/samtools_stats.xml Sun Sep 08 03:27:04 2024 +0000 +++ b/samtools_stats.xml Thu Jun 19 13:01:32 2025 +0000 @@ -1,4 +1,4 @@ -<tool id="samtools_stats" name="Samtools stats" version="2.0.5" profile="@PROFILE@"> +<tool id="samtools_stats" name="Samtools stats" version="2.0.6" profile="@PROFILE@"> <description>generate statistics for BAM dataset</description> <macros> <import>macros.xml</import> @@ -275,7 +275,7 @@ <param name="select_region" value="tab"/> <param name="targetregions" value="12_3reads.bed" ftype="tabular" /> </conditional> - <param name="remove_overlaps" value="-p"/> + <param name="remove_overlaps" value="true"/> <output name="output" file="12.3reads.nooverlap.expected" ftype="tabular" lines_diff="4" /> </test> <!-- test_cmd($opts,out=>'stat/12.3reads.nooverlap.expected',cmd=>"$$opts{bin}/samtools stats $$opts{path}/stat/12_overlaps.bam -p -t $$opts{path}/stat/12_3reads.bed | tail -n+4", exp_fix=>$efix);--> @@ -300,7 +300,7 @@ <param name="select_region" value="tab"/> <param name="targetregions" value="12_2reads.bed" ftype="tabular" /> </conditional> - <param name="remove_overlaps" value="-p"/> + <param name="remove_overlaps" value="true"/> <output name="output" file="12.2reads.nooverlap.expected" ftype="tabular" lines_diff="4" /> </test> <!-- test_cmd($opts,out=>'stat/12.2reads.nooverlap.expected',cmd=>"$$opts{bin}/samtools stats $$opts{path}/stat/12_overlaps.bam -p -t $$opts{path}/stat/12_2reads.bed | tail -n+4", exp_fix=>$efix);-->