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comparison substitution_rates.py @ 1:3d9544198582 draft default tip

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planemo upload commit fa9a2569c9ece4b03f622d0b85b0e5376a25084c-dirty
author devteam
date Tue, 29 Sep 2015 11:09:15 -0400
parents d1b35bcdaacc
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0:d1b35bcdaacc 1:3d9544198582
3 """ 3 """
4 Estimates substitution rates from pairwise alignments using JC69 model. 4 Estimates substitution rates from pairwise alignments using JC69 model.
5 """ 5 """
6 6
7 from galaxy import eggs 7 from galaxy import eggs
8 from galaxy.tools.util.galaxyops import * 8 from galaxy.tools.util.galaxyops import parse_cols_arg
9 from galaxy.tools.util import maf_utilities 9 from galaxy.tools.util import maf_utilities
10 from bx.intervals.io import NiceReaderWrapper
10 import bx.align.maf 11 import bx.align.maf
11 import fileinput 12 import fileinput
12 import sys 13 import sys
13 14
14 def stop_err(msg): 15 def stop_err(msg):